Gene detail

Detailed information of XP_074607034.1 in Acropora palmata

Genomic Location: NC_133893.1:7891019...7935441
NR annotation: XP_029205879.2, calcium-activated potassium channel slowpoke-like isoform X3 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074607034.1

ATGACAAGTAAGACTTGCCTTCGAGCTGAACTGCTTGTCAAGTGTACCTCGGACTGCTTAGTGGCGCAAGAGGATAGAAAATGGTTTTATTTCCTTGGGACAAGCTTAGCGATATTTCTCGGTGGTCTAGCGGTTATTCTGGTCTCCAGATTAACAAGGAAATTTTGTGACTCAAAACGAACTCGACTAAATCCGAATAAAAAAGATGGAAACAAGAGCGTCGGCCGCCTTCAACCGCGGAGTGTTTCCAAGAGAGGAATTTATATTCGACTCAAGGAGAAAGCAGCAACCTTGATCACCGCGCAGACATTTAATGGTCGATTTCTGGTTGTGCTTCATTTTCTTGCAAGTATATTGTACATTATCTTGTTTATCGTGGAATCAAAGTATCCCATTGAACACTGCTTGGATTTTGGAAATCAAAAACTATGGCTTTTTGATATTGCCTTTAACCTGTTCTTCCTGTTTTACTTCTTACTTCGGTTTCTTGCTGCTAATGACAAGCTGGTGCTTTGGTTGGAGATGTTGTCCCTGGTTGATTTTTTGACAATTCCAGAGGTGTTTGTTTCCATCTATTTAAGACAAAACTGGCTAGGACTAAGATTTCTGCGTGCTATGCAATTTATTAGACTGGCAGATATTTTGCAGTACATGGGTATCATACAGTCAAGTGGAACCATCTTGCTGATGGTAATGTTTGGAAATTTGGCAGCTCTCTTGTTTACATCTGGTGGAATTGTTTTGTTGGTAGAAAATGCAGGAGATCCATGGAATTTTACGAATGGCCAACACTTGAATTATTTTGAATGCCTCTATTTCCTAGTGGTTACCATGTCAACTGTTGGCTTCGGAGATATATCAGCACAAACTTATTTTGGAAGATTATTTATGATGTTATTTATCTCAATTGGTCTGGGTATGTTTGCAACCTATATTCCAGCTATCTTGGAATATTTGTCCTCCCACACTGTTTATCATGGATCATATAAGCTGCAAGATGGAAGAAAGCATATCATCCTCTGTGGATATATAACAAAGCAGAGTGTTGAAACGTTTTTGAGAGACTTTCTTCATAAAGACAGATCCAATACACAAGTGAATGCGGTTATCATGGGGAACTTTTTGCCAGATACTGAGCTTGAATCAGTACTCAAGAAGCATTTTGTCAGTGTGTCATATTTCAAGGGGACTGTGCTTAGTGGAGAAGACTGCAGGCGTGTTAAGATGAATTTAGCAGATTGCTGTATTGTGTTGTGCAACAAAGAATGCATTGATCCCAATGAAGAAGATGCTGAAAATATCATGAGGGTTGTGGCCATAAAGAATTACTATCCAGCGATACGCATTATAATCCAGTTGTTGCAATACCAAAACAAGTCATACCTGTTGAATATTCCGTCTTGGAATCCTAAATATGGAGATGATGTGGTTTGTATCAGTGAGCTCAAGTTGGGATTTATTGCACAAAGTTGTCTTTCACCAGGATTTTCAACTCTGTTGGCCAATGTGTTTTCCATGAGATCTAATGACACAGCAGCTCTAACAGAGTCAGAGCAATGGAAAGCATCCTACATTGAAGGTGCCAACCTTGAAATGTACACAGAAACCCTGGCATCGTCATTTAAGGGAATGGGCTTCCGTCAAGTCGCAGAGACCTGTTTTGAGAAGCTTGGTCTTCTTCTCATCGCCATAGAAACCATTACACCCGAGGGAGAAAAGATATTTGCTATCAATCCATTGGATAAGCTTATTGAACAAAGAACCAGAGGCTACTTCATTGCTGGATCAAGTGCTGAAGTAAAAAGGGCATACTGCTATTGCCAAAGCTGTCACGCAAATGTTACGTCACCAGAACAAATCAAAGAATGCCAATGTTTGAAAGGAAGTCTCACCTTTCGTGGACTCGGCAAAGCTGTCCTCATCACCGCTGCTTCGGTCAAAGCGGCTGACCATAGAATACCATTTCCAGGTCCAAAGAAAGGCTCTGGAATCCCTAAACTAGGAACTTACAAAGTCCTGAACAAGCTTAAGGCATTAAAAGAACAGCAATCGCATTTTGGCGAAAAAATTGCTTGCTTCGACATCTCGGGGACATTTTATTGGTGTGAACCCAAGAGATTCGACGATCAGTTGTTGACTCGTGTGGAGGCCATGAACATTATATTTTCACACCATATTTTAATTTGTGTCTTCAATGACAAGGATTCGCCTTCAATAGGTTTGAGACCACTGGTGATTCCATTAAGAGCCAGCAATTTGCTTCAAACAGAGCTAAAGAAGATTGTATTTGTTGGAAACAAAGACTACATGCAGAGAGAATGGCATCAGCTTTGTAATTTTGAAGATGTCTATGTTTTACCTGGCTCCCCGTTTTGCCGTGCAGATCTTCGCGCTGTCAACGCCAATCTCGCAGACATGGTAGTTTTTCTTTCGCCCTCGACCGCCAGCAAAGCAGACGACCCGAAGCTCGCCGACAAGGAATCGATTCTAGCGTCGCTGAACTTGAAAGCAATGTCTTTTGATGATGGAGTAGGAATGTTGAGTGAAAGTGCAAGGAACGCGTTTTCCACAGGTCTCGAGTTTAACGATACATCGCGCGTGGAGAGAAGGGGATCAGCATATGGCTGCAATGTTCCAATAATCACTGAAGTTGCCTTTGATCAAAACGTTCAGTACTTGGACATCGATGATGAGGATGTAGAGGACCAGGAATTGTACTTGACGCAGCCATTTGCCTGCGGAACGGCATTCACTGTCTCCATGTTGGACTCGCTAATGAGCGCAACCTACTTCAACCCCGACATATTAACCTTGGTTCGAAACCTGGTTACGGGAGGCGTGAATCAATTTCTGGAGGAACATATTGCAGAAGGAGACGAACTAAGAGGGGGGCTGGATTCCGAGCAAACTGCAGACACAAGGAGTCGATGTAAAATTTTACAATTATCGTTGTTTGAAGGGCCGCTAGCGGCTTATGGGGACGGAGGCAGGTTTGGTGAACTGTTTTTACACGCTTTGCGGACCTCTTCAATGATATGTCTGGGTTTGTATCGCTTCAGAGACAGTCACGCAAATCATGTTGGCGTTCCATCAGCAAAGCGTTTTGTGATTTGTTCACCCCCTTACACCTTCAAGTTACAACAAACGGATCTTGTTTTTGTATTGGCGCACTCAGACCCACAGCTGGAAAAATTTAAATCGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O18866	Calcium-activated potassium channel subunit alpha-1 (Fragment) OS=Sus scrofa OX=9823 GN=KCNMA1 PE=2 SV=2
Q28204	Calcium-activated potassium channel subunit alpha-1 OS=Bos taurus OX=9913 GN=KCNMA1 PE=1 SV=2
O18867	Calcium-activated potassium channel subunit alpha-1 (Fragment) OS=Macaca mulatta OX=9544 GN=KCNMA1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001657 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21014 all species →	Slowpoke_C	Ca2+-activated K+ channel Slowpoke, TrkA_C like domain	Domain	Interproscan
PF03493 all species →	BK_channel_a	Calcium-activated BK potassium channel alpha subunit	Family	Interproscan
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048735 all species →	Domain	Ca2+-activated K+ channel Slowpoke-like, C-terminal domain	Interproscan
IPR047871 all species →	Family	Calcium-activated potassium channel slowpoke-like	Interproscan
IPR003929 all species →	Domain	Calcium-activated potassium channel BK, alpha subunit	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10027 all species →	CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005267 all species →	Molecular Function	potassium channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0045211 all species →	Cellular Component	postsynaptic membrane	Interproscan
GO:0060072 all species →	Molecular Function	large conductance calcium-activated potassium channel activity	Interproscan
GO:0071805 all species →	Biological Process	potassium ion transmembrane transport	Interproscan
GO:0006813 all species →	Biological Process	potassium ion transport	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04936	KCNMA1, KCA1.1; potassium large conductance calcium-activated channel subfamily M alpha member 1	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.