Gene detail

Detailed information of XP_074607141.1 in Acropora palmata

Genomic Location: NC_133893.1:4700238...4709274
NR annotation: XP_015774705.1, PREDICTED: uncharacterized protein LOC107352897 [Acropora digitifera]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074607141.1

ATGGCGAAGGAAAAAGACTCACCCAGCCAGCAAGAAAATAGCGGTAGTGCGTCCAAATTCGCTTATACGTTTTGTTTTATTTCTGTTTTGATCTGCGCAGCGGTTTTGGTCCGCGTGGAGATCGTAAACCAGCGAGTTTACGTAGTCGAGAACAGCCTTGCAGAAGTACGCAAGCAAAATGCTGATAAGAATTCCCATGGCTCTGGAGAAAGCTTCAAACAAGAGAAAAGGGAGAAGTACAACAATGGATTAAATCTCAACTACGAAAATGTCAGAGATTTGGTAACTGATAAAAATGTAACATTGAGAACCCGCAGGTTTTCTGGAAGAGCTCCAGACGACCCAAAGCTTATTATGGAAGCTGTCAGAAGGGAAATAAACAAGACCATTTCTTCTCTCAAGCCTGAGGCATTTTGCTCATCCAAGGAACAGATATGCGTACATGGTCCACCGGGAATTCCAGGCTCGAAAGGGTCTCGTGGTAAAAGAGGACCGCGTGGAAACACTGGGCGAAAAGGATCACGGGGGTTTACCGGCGACCCAGGCCCTCATGGTAAGCAGGGAATCCAGGGTCCTCCCGGCCAAAAAGGGGCACAAGGAGAGAAAGGAGTTCCAGGCCCCAGAGGATATCCGGGTGCAAAAGGAGATGCCGGTGAATCGATTTCAGCCCCTACGGCAGTGATCTCGCCGATGACACAAACCTTAAGAGAAAATCAGAGTGCTATCTTCCGGTGTTCAGCTACTGGAAATCCAAAACCAAGCGTGATGTGGTTTGGATCTGATAGGAACTGGACTGGCCATTTCCGGTATCAGTCAGATGGTAGACTTGAGATTCGTGGCGTGGGTCTTACAGAAGCAGGAGTATACACATGTGTCGCTAAAAATATGTTTGGTGCAATGAATAAATCAGCAATTTTAACAGTTGAAGCTCCTCCTCGTGTCCAGCTTGCCCCAGGTCCCACTTATGTGAAAGCTGGTAGAAGGGTCACGCTACCTAGTTGTAAAGTGACTGGATTTCCTTTTCCTGTTGTGACGTGGGAAAAACTTGGTGGGATTTTGGCGACGAAAAGAGCCGTGTATGGAGAGGAATCCCTAACTGTGGTTGATGCCAGAAAAGCTGATACTGGGCCTTATCAGTGCAAAGCGAAGAATAATCTAGGAGTATCCTATGGATTTACAACATTGGTTGTTTGGACTCAACCAAAATTTATCTTGAGACCGCCGAGTTGGGTTAGCAAAAGAAGTGGTCAAAATCTACTTCTCAACTGCAAAGTATCCGCTGAAGCTTCCATTTCCTGGCGACGCGTCGGGGGAGCATGGATAGAAGACCGAATGAAAGTGAAAAATGGGACGTTGGAGATTTCTTCCCTGACACAATCGGATTCAGGATCTTACATTTGTGAAGCCAAGCTGCCCTTCTCTACTATAAGGGCTACTACCACTTTACAAGTCGGTCTCATCTTCCTTAACTTGACGACGAATGGTCGCAAAGGAAGATTTGGTGTAATTCAGAATTTCACCGTTCCAACAACCGGACGGTACAAAATCAAGGCGTGGGGCGCTAGAGGAGGAACACACTCGAGTAACTATGGTGTCTCTCCAGGAACTTACTACGGTGGAAAAGGAGCTTTTCAAGAAGGAATATTCACATTGACTGAAGGAACAGTACTGAATATTGTGGTTGGACACAGAGGAGGAGATTCAGTGGAGGTGAAAGGAGGTCGGTCCACTAACAAGACTGCAGCCGAATTGGGCTTGTCTGTAGAAGACAATGCTGGAACAGGCGGAGGGGGAGGTAGCTTTGTTTATACTTCAAGTAACATTTTTTTGCTAGCTGCCGGTGGGGGAGGTGGTGCGTCTGCTGGATATAATGGGTCGGATGGTCAGGCAGGTACTACTGGGAGCAGTAGCGTAGGGAAAGATTCTTCCAGAAGCAGAAGCGGGGGAACTTGGGGACAACCAGGTCAGTGTAACAAGGATGATGCTAGTTACCATGGAGGAGTTGGTGCAGGTTGGTTGTCACAGGGTTGTGCTAGGGCAGGTTCATCGCATGGGGAGAGGGGTGGGTCACGTGATCAGGGTTGGGTAGGAGGAAGAGCAGGGGGAATGAATAGTGGAAGCAATGGAGGACCACCCCCTGGAGCAGTGGGAGGATTTGGAGGTGGGGGAGGGGGATCTGAAGATAACGGTGCATCAGGGGGTGGGGGTGGATACTCTGGAGGGGGAAGCGGCACTTACCCAAATCAAGCCGGAGGGGGAGGGGGCTCGTATTGCAGTGGTTCGAGTTGTTCAGGCTGGCCTGGTGCCAATTCCAACGATGATGGCGAGGTGCAAATAATTGAATTATCTGGCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D3YXG0	Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1
Q6WRI0	Immunoglobulin superfamily member 10 OS=Homo sapiens OX=9606 GN=IGSF10 PE=1 SV=1
Q8WZ42	Titin OS=Homo sapiens OX=9606 GN=TTN PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000896 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF12810 all species →	Gly_rich	Glycine rich protein	Family	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF01391 all species →	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR051170 all species →	Family	Neural and epithelial cell adhesion domain-containing protein	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR008160 all species →	Repeat	Collagen triple helix repeat	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12231 all species →	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for XP_074607141.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074607141.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074607141.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

68TPM > 0

2Conditions

373.9Max TPM

45.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	42	78.41	373.88
all_coral_tissue · baseline	38	26	5.71	22.19

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	373.88
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	288.23
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	205.78
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	204.48
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	203.12
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	182.14
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	173.88
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	172.11
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	161.95
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	157.62
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	119.50
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	91.67
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	81.26
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	78.45
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	77.36
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	71.51
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	66.18
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	64.58
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	64.21
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	63.13
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	59.31
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	57.23
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	57.14
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	55.10
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	46.45
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	44.22
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	36.83
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	36.44
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	32.48
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	28.66
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	27.82
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	27.35
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	26.54
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	25.91
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.85
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.50
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.78
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.70
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.99
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.74
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.46
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.24
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	22.19
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.61
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.41
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.39
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.37
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.76
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.60
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.38
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.34
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.21
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.20
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.65
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.64
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.11
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.94
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.91
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.60
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.11
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.65
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.44
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.27
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.84
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.71
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.47
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.25
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.03
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.