Gene detail

Detailed information of XP_074607582.1 in Acropora palmata

Genomic Location: NC_133893.1:6818557...6851509
NR annotation: XP_029204107.2, probable G-protein coupled receptor CG31760 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074607582.1

ATGCTTCTCGTACCCTTGATGGTAAACGCTTTATGTGTTATATTGCCTTGGTCTCAACGCATCGCTGAAGGAGAAATGTTCAACATCGAAGATTATTCAGTCGATAACCCTCATCGTGAGCCTTTAGCGGATAATCGCCCAGCCGTTTTCAACATGGATGCCCGAGAAGCCTTAAAGGCAATTGAACAAGTTTACAATGAAAACATCGATTGCGAAACCATGCTAGCAACACGGGACATCAAGCTTCTCGGAATTAAATACAAGAATAGTGTTTTTACTCGTCAAGCTAACATTGGAATACGCTCGGCCAATCTCGTATCCGATCTGCTTCCGACGGGCTCGGCAAAATCGTTGAATTTTTCCGATGGCATGGTGCTACGGACCCATCCCGAAGTACTGTACGCTATGGTCCGAAATAATCTTGAACACGATCCTCTCATTGTTGGCTCGGCGCTTGTGTTGGATAATAACAGCTTCATTAACAATTCATTTTATGCTCCGTACGCCTATCGCAATTCAGAAGACTCTTTTATCAAAATCACAGATTGGTCGGCCAATTGGGGCTACGTCCATGAAGCGTTTATGAAGTTTATGCGCCAGAAATCGTTGAACCGAGCGTTTCCAACCCGATCGACATATTTCTTTCAAGAGAACAAAGCTGACAAACGAATGAATCTCACGCATCACTTTGTTGAGTCCATTGACGGGTTGTGGAGTCGGCCTTACTTCGAGTGCTCCACTCTTAAAGCCTGGGTCATAACGTACTCTTCTCCAATCTTGGGAAACTGGGACAAGAAAGGAAATGTCTCCTTCATGGGTGTGGGCACAATTGACATAGCTCTAACGAATGTGGACATCAATCAATGCGATAAAACACGCGGAGGTATATTTCAGTTCGAAATTTTCGCGGGCACTCATAACTGCAAGAATGAGACCACACAGTGCACTTTCGTCAGTGGTCTTGGTTTTCGAGCTGGTTCCTACAAGTGCGTGTGCAAGCCTGGTTACTACTTTCCTAACGTCACAGCTCGTGAGAAATACTTCAATGGCTCTGTAATTGAGGCTGAAGCTGCTGACCAAAAAGCCAGCTACTACTCTAACCCAGACTCTTTTCAATGCCTGAAGTGCCAACCCGGATGTAAGACATGTAAAGATAGTTCACCGTGCATCGTGACCATGAACTGGCCTCTGAGGAAGGCACTGATGGGTTTAACAGCTGTTAGTATCGTAGCTGCTATTGGAATAATGGCATTTGTAATTCACTTTCGCGAACTCAAGGTAGTTAAAACTGCAAGCCCACAATTCCTTGTTACTATTTTGTTGGGATGCATTTTGCAGTATTGTGAGATGTTAATCGAATACCCAGGATCCAGGAACCTCTTTTGCATCATGCGTCTTTGGTTTCGCCACATTGGCTTTGGACTTGGTTTCACGTCTTTGCTTCTTAAAACCTGGAGAATTTCTGTGATTTATCGTGTTAAGTCTGCACAGAAGATAAAACTCACCGATCGGCAACTTTCACAGCGCCTCGCTCCGATTCTTGCTTTGTACATCGTGTACTTGCTGGCCTGGTCTCTGGCTAAGCCGAGTCACGCGATAGAGATGAAGATGACAGGCGGGTTGAGGTTTGAAGAGTGTTCTGTGGATTGGTGGGACCACGCCATTTTGATTTTTGAGATGCTGTTTCTCCTCTGGGGAATTCACTTGTGTTACAAAGTGAGGAAGGCGCCGTCTGCGTTCAATGAGAGCAAATTTATCAGCTGGTCAATCTACAATTTAACAGTGGTGACACTGCTTTTGAAGATCACCAGGTTTTTCATCGGGAATCTTGCGGGACCTGATTTGCTTTACCTGCTTGAGTTCTTTAGAGTACAACTCAGCATCACTGTTCTACTCGGGCTGGTATTTGTACCAAAGATACTCCGTGTGATTAAAGGGCGTGGTGATACCTTTGATACACGCGGTCGCCTTGCGTCATTGAAAGGAGGCGCTGTCAGTATGTCAGCTACAGGAACTTCACAAATAACAGTGAACCTGAGTCAAGAGAATGAGGAGCTTAGGGAGGAGATACGTAAATTATACGCACAACTACAACAATTAAAAACAACCAACATGGAAGCGGGAAACATACATCTTGGACGCACCAGTTCCGTAATGCATGCCAGTTCTACACCTTCGCTTGTCAGTTTTTCATCCCCGAGTGAGAATGGCAGCGTAGCTCATTTGGTTCTCTCGCCTGGCAATGGAAAACGGCAGCAGAGATTTTCCGCTACAACCGAACTTGCTAGCGACTTTGTTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VKA4	Probable G-protein coupled receptor CG31760 OS=Drosophila melanogaster OX=7227 GN=CG31760 PE=1 SV=3
Q5T848	Metabotropic glycine receptor OS=Homo sapiens OX=9606 GN=GPR158 PE=1 SV=1
Q8C419	Metabotropic glycine receptor OS=Mus musculus OX=10090 GN=Gpr158 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001303 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00003 all species →	7tm_3	7 transmembrane sweet-taste receptor of 3 GCPR	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017978 all species →	Domain	GPCR family 3, C-terminal	Interproscan
IPR043458 all species →	Family	G-protein coupled receptor 158/179	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32546 all species →	G-PROTEIN COUPLED RECEPTOR 158-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08469	GPR158; G protein-coupled receptor 158	-	G protein-coupled receptors	ko04030	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074607582.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

68TPM > 0

2Conditions

5.6Max TPM

1.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	35	1.83	5.64
all_coral_tissue · baseline	38	33	1.49	3.48

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.64
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.22
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.47
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.18
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.48
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.23
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.11
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.97
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.89
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.88
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.85
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.67
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.54
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.52
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.30
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.29
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.23
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.13
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.06
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.92
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.89
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.89
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.86
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.85
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.85
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.77
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.69
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.64
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.64
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.51
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.38
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.22
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.89
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.88
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.63
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.48
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.35
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.99
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.86
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.76
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.54
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.19
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.08
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.06
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.92
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.89
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.83
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.82
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.73
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.73
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.72
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.72
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.66
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.47
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.40
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.39
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.35
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.34
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.25
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.24
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.21
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.12
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.11
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.91
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.91
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.87
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.74
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.04
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.