Gene detail

Detailed information of XP_074607652.1 in Acropora palmata

Genomic Location: NC_133893.1:14027884...14045169
NR annotation: XP_029190852.2, pseudouridine-metabolizing bifunctional protein C1861.05-like [Acropora millepora]
Species abbreviation APALM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074607652.1

ATGCTCAAAATAGCTTGTCAACTTAAGCAAGCAAAGCCTCCCTGGAGAATTACAAGGTTGATCTCGCATGCTCTTGGACCAGGTCCTCCCGGGCTGAAAAGATTCCCAGATGGGCTTATTAAAATAAATCCTGAAGTTGCAGAGGCAATTGTGAGAAGAAAACCAGTGGTCGCCTTTGAGTCAACTATTATTACACATGGAATGCCATATCCTGAAAATCTTCGGGTTGCTAAAGATGTAGAGAGGATTGTTAGAGAAAATAGTGCAACACCAGCAACTGTGGCAGTTATTGCTGGGAAAATCCATGTGGGATTGTCTGAAGAAAACCTGGAAAAACTTGCTCACAACAGACAAGTGATCAAGACTTCCAGAAGAGATTTGCCATATGTGATCAGTAAAGGTCTGTCAGGAGCCACCACTGTGTCTGGCACAATGATTGCTGCTCATGCCACAGGAATACCAGTTTTTGTCACTGGTGGGATTGGCGGTGTGCATAGGGATGCCCAATCAACATTCGATATAAGTGCAGACTTGACAGAGCTTGGTAGAACTCCAGTGGCAGTTATATGTGCTGGAGTAAAATCTATCTTGGACATCGAATTAACCTTGGAATATTTAGAAACTCAAGGAGTTTTGGTTTCAACATTTGGAGACAAACTTGATTTTCCTGCATTTTTTACTCCAGAGAGTGGATTTAAGTCGCCATACAATGTTCAGTCTCCTGTAGAAGCAGCAAAATTAATTGATGCCAATTTATCTCTTGGCTCGAGCAGTGGAATTGTCATAGCTGTGCCAATATCCAAGGAAGAATCTGCCAATGGACTGGAAATTGAGAAGGCGACTCAAACTGCTCTAAAGGAAGCAAGAGATCAGGGTGTTCTTGGAAAAGAAGTCACTCCTTTTGTACTTCAAAGAGTTAACGATATCACTGAAGGACAATCTTTGCAATCCAATATTGCTCTTATAAAAAACAATGCTCGTGTTGGAAGCTCAATAGCTGTTGAATTGTGCAAAATTCGAAAACTTAAAGAAACTAATGCAGTGAGTGGTCGCAACAAGCTTCGTGAGACACCAGATCTTGCCACAGAATTGAGTGAATTGCAGAGACCGGTTGTGATTGGAGGATCCAACGTTGATTTCATAGCCACGGCAGAAACTGTAATACCTGAAGCCTCTAACCCTGGTCAAGTGAGAATGAGTTTTGGAGGCGTGGGGAGAAACCTTGCAGAATGTCTAGCTCGTCTTGGTTTGAAGCCCATATTTGTATCAGCAGTAGGAACTGATCCTCTTGGAGTCATGTTGCTCAAACACTGCGAAGAACTCAAAATGGTGACGCGCGGCATATACACATCCAATGTGAATCACACTGCTACTTATTCGGCCTTAATGAGTCAAAATGGCGACTATCACATGGCAGTTGGCGACATGAATATTCATAAAGTGATTACTCCTGATAATATTTTAGCTTTTGAAGAACCGATCAGACATGCTCCGCTTGTCATGTTGGATTCCAATATTAGTCAAGAAGCCATTGATCATGCATGTAGCTTCTGTGGCGAAAATCATATTCCAGTGTGGTTCGAACCTACTTGCATTTTGAAATCACAGAAGCCCTTTCTGTCTGAAGCCTGGCACAACGTAACCTACGCATCGCCAAACCTAAAGGAACTGAAGTCGATGAACGAAGCCATAACGAAACATGAACAAGAGAGACCTAAAAACATCCCTGCGTTACTTGAAACAGAAAAGGAGCCATCGCTAGACGACATTCTCACCCAGTCTGTAAAACTCTGTAGACCGCTCATGCAACATATTCACTGTGTGATAGTTACATTAGGCAAACATGGAGTACTTGTTTGTAGAGATACGGAAGCTGATACGCCTTTTCCGACGTCATCCCAGTTGAATGCCATACCTACGCGCCAACACAATTTAATTTCAGCGCGGCATTTTCCTTCAGTAGGTCACGTGGATATAGGCAACGTCACAGGCGCTGGGGATAGCTTAGCGGCCACAATGGCTTTCTTTATAATCCGTGGCCATCCTCCGGACTTGTGCGTGAAGGCTGGTTTACTGGCTGCTCATCTCTCGCTTCAGTCTCCAGACGCCATTCCTATTACAATTGACCCAGAAAATTTCACTCCTGAAAATGTTGAAGACTGCATACAATGTGAAGCTAAAGACATCGATTGTGACATCTCCTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8RCT3	Pseudouridine-5'-phosphate glycosidase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=psuG PE=3 SV=1
Q84K35	Pseudouridine-5'-phosphate glycosidase OS=Arabidopsis thaliana OX=3702 GN=PUMY PE=1 SV=1
A7GCK7	Pseudouridine-5'-phosphate glycosidase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) OX=441772 GN=psuG PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004160 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04227 all species →	Indigoidine_A	Indigoidine synthase A like protein	Family	Interproscan
PF00294 all species →	PfkB	pfkB family carbohydrate kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029056 all species →	Homologous_superfamily	Ribokinase-like	Interproscan
IPR022830 all species →	Homologous_superfamily	Indigoidine synthase A-like	Interproscan
IPR007342 all species →	Family	Pseudouridine-5'-phosphate glycosidase	Interproscan
IPR011611 all species →	Domain	Carbohydrate kinase PfkB	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42909 all species →	ZGC:136858	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004730 all species →	Molecular Function	pseudouridylate synthase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16330	K16330; pseudouridylate synthase / pseudouridine kinase	EC:4.2.1.70 EC:2.7.1.83	Pyrimidine metabolism	ko00240	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.