Gene detail

Detailed information of XP_074607940.1 in Acropora palmata

Genomic Location: NC_133893.1:13815881...13834063
NR annotation: XP_044180908.1, neurogenic locus notch homolog protein 2-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074607940.1

ATGAAAGCAATGCTTAATAGATGGCATAAATGGATGTTTGTCTTCTATTTGTTAATTGATCTTCAATGCGGAGATAGCAAAACGCCAGTCGCCACTCGAGACAAAACATTCAAACTAACAACAGGTAAAAATCACCATGATCGCAGAAAGGAAAGCTTTAAGGAAAAGCGTTTCACAATGGCTGATTCCCCAAAAGGGCGAGTGGTGTACGCCTACGTGTCAGACAGAAACCGATATGTGCGGCCACGAAGACATCGCTTGTATCGAACTTACATCATAAGGGGACCATCTAGCTTTCGGCCTCGGACAGAGAGTGCAGTGGAACGTCAAAATATCCCTTATCTCACAATGCCGCCCACATATCAGCATGTTGAACTACCTAGAGCTCGCCTAATTACGTCAGAGCCAATGTTTTACGATCAGGATCAACCCTCGTTAGAAGCTCAGGGACTTGGTGAATTCGATGATCCTTTTTCGCAGGATGAACAGACATTACAAGATGAAGCTCACGAATATTCAGTTCAAATTGACATATGTGAGCCAAATCCATGTTATAACGGAGGTCGTTGTAGAAGACACCGACATCGACGATTCAGGTGCCACTGCCTTCCAGGATACAATGGAAGATTGTGCCAAGTATTGCAAACTAAATGTAAACCGAACCCTTGTTTAAATGGAGGAACTTGCACGCATGTTAATGGAGGATTTGAATGCTCCTGTTCATTTGGATACAAGGGAGAAACGTGTGAACAGAAAGCCTTGTGTAAAAGCAATCCTTGCTTGAACGGAGGCTCGTGTACAGAGCTTGACTACGACTTTCAATGCAGTTGTTTACCAGGCTATCGTGGAAAAAGATGCCAAGATAGGAGCTACTGCTATCACAACCCTTGCAGGAATGGGGGTACATGCATGGAGACAGACACTGGGTTTGACTGCATCTGCACCAGAGCATGGGGCTGCAAGGACTGTAGCTGTACTGCCTCAATCAAACATTCCGAAATCAAGCAGGATTGTTTTCCGAATCCATGCCAAAACGGTGGAAGGTGTTTTACAACTCCTCCTCATGGCTTCAAGTGCCTTTGTCTTCAAGGGTACAAGGGAGAAGTGTGCGAAGCATCTGAGTATTGCACGTCAGCTCCTTGTCTTAATGGCGGAACTTGTAAGGAGACAAAGAATGGTTACAGCTGCACCTGCAAAAGTCGGTTTAGAGGAACAAACTGTGAGGTTGAAAACCATTGCCATCCGAGAAATCCCTGTAAGAATGGTGGTCTATGCGTCGAGTTAGACGATGGGTACAACTGCAGATGCAAAGTTGGATTTACAGGTCTCAATTGCGAAGAAAAGGAACCCTGTATACCAAATCCCTGCAAGAACGGAGGAACATGCAGTACTGAACAAGATGGTTACACCTGCACGTGCCACACAAACTTCAGAGGAGAAATATGTCAAATCCAGAACATGTGTACCTCAAATCCATGTCTTCATGAAGGAACGTGCATCGATCTGGATAACAACTCTTTCAAGTGCCTCTGTAAGGAAGGCTGGATTGGACAAAACTGTGAAGAAAAGGATTTATGCGTTCCTGACCCTTGCAAGAATGAAGGGCGCTGTGATGCACATGGACTTAGAGTTGCCTGCTACTGTGCTTTAGGATATAAAGGAGAACATTGTGAAGAAAAGGATTTATGCAGTCCTAACCCATGTCGCAACAGAGGTCATTGTTTGGCACGAGGAGAGAGTGACTTTGAGTGCAATTGTGGTTCTGAATTCACAGGATTGAAGTGTGAAAGAATCAATCCTTGTTATCCAAACCCATGCACAAATGGTGGATCATGCAAGTCAATAGCCGAGGGCTTCAACTGTGTCTGTCCCCTTGGAAGAATCGGAGAGTTTTGTGAAGAGAGCGACCCTTGCTTTCCGAATCCGTGTCAAAATGAAGGATCGTGTTCAGCACTCAGCCATGGTGGATATCACTGCACATGCATACGCGCTTTTGTTGGATCAGTCTGTGCAGTTCCAGATCCTTGCCTCCCCAGTCCGTGCCTCAACAATGGCACATGCATCAATACCGATACCACTTATCAATGCCGTTGTGCGCGAGGATTTTTCGGAGAGCGATGCGAACATCAGTCCAAATGTGTTCCGAATCCCTGTCTCCATGCTGGCACTTGTCGTGACGTAGACATTTCACGGGGATATGTGTGTTACTGCTCCATTGCGTACTTGGGTCCAAACTGTGAACGAACCAACTTATGTTACCCAGACAACCCATGTCTAAATGGAGGAACATGTAAGAGTGATGGCACCAACCAGGCTTGTCAATGTGTTCTAGGCTATCTGGGATCACACTGTGAGCAATTCAACTTTTGCCACTCGTCACCTTGCAAACATAACGGAACGTGTACTCCGAAGACGAACGGGTTTGACTGTGAATGCAAACAAGGATTTTTCGGAAAGACATGCGAAGTGCTGAGCAGCCATTGCTTTCCTAATCCTTGTAAGAATGAAGGTCTGTGCACTGAAGTAAAGAACAAGGATGGGTACATGTGTATCTGCAATGAAGGATTTGTTGGGAAGAATTGTGAAAGAAATGACCCATGCAAACCAAATCCGTGCCATCACTCAGGGACATGCTTGCAAGCACATACAAGCAGAGGGTATCACTGTCTTTGTCAACCAGGATGGCGAGGATATATCTGTGATCGTCTGGATCTTTGCTCTCCACGAAATCCTTGCTTACATGGCGGGACATGTTTCAACGCGTTGGAAACCTTCATCTGCCATTGTCCACCACGATACACGGGGAACAACTGTTCAACTGACAAGTGTGATCGCTGCGATGAGCAAGCAATTTGTGTGAACGGGACTTGCGAATGCAAGCAAGGCTTTGTTGGCAATGGCTTCACCTGTATAGCTGTTGGAAACCCTTGTCAACCCAACCCCTGCGAAAACGGTGGAACATGTAATCCAGGGCACGGTGGAAAATTATTCGAGTGCGTTTGCAAGGAGGGCTTCAGTGGTAGCAAATGTGAAGTCTCCAAAAGCGCATGTGTTTCAAGTCCTTGTGTAAATGGAGGATCATGCGTAGACGCTACAAACAACGATGGATCCTTATTAGAAGGCGTGGTATTTACAAACTATTCGCAATACAAATGTGTATGTGCCAAAGGATATGCGGGGCAAAACTGCCAAAAACTCGTGTTGGTAAATCCATGTTCCACGCATCCATGCATGAACAATGGTACATGCTTTGATGACGCAAGCAGTGGTGCGATGGATATCAAGCTTCTCAATTCCCTGGATTTCCGGTGCTTCTGTCCAAAAGGATTTAGTGGAATTATCTGTCAAAACCCTTATCCGGCTTGTCAGTCAAGCCCATGCCTCCACGGTGGGTCATGTCTGGATTCTTCAAATACCGCTGATGTGGCCTTCAATGCCATTGGTTACAAATGCCTTTGTATCGAAGGATTCAGGGGCCCGAACTGTGAAGTGACTGAGAAGGGAATACTCAAAACGAAGCCTGTTAATGAGACTCTGCCCACAGGACTTGTAGTGCAACCACAGAAACCCTACCAACTTGTGAAGCCAGCGGCTGTCACAATCACCCCTAACGTTGGAGCCGCAGCAGAGCTTACGAGCCCCAGTCAAAACCAGAATATTGCAGCAGTGAAGTCGCAGGCACCCCAGCTTGCTCTCATTAAAACAAATACTGGTGTTACGTCTGTTTCAGGACCTCCTTTGGCCGAATTGTATGCGCGACCAAATTCTATCGGTAGTATTCCTGTGACACCAGCTCAAAGTTCAAGTCGTTATACTGGTTACCTGGCGCCCCCCTTATCACCTGTCTTGCAATACGTACCCTCTCCAAACACAGAAGCATCAGCCGTAAAACCCGTTTCTTCCTTCACATCACGAAAAAATAATGGAGCGTTACCTCAGTCATCTTCGGCTACCCTGATTCCCTCTCCTCCATTGCAGCCATCCGCTACAGCACCGGTTCCTGCAGTTGCTGAGTCACCAGTGATCGTAATGCCTCCGGGCATGAAACCACCGCCCTCGGGTGAAAACGGAATTTTAAATCTGGTATCCTTTCAAGGGGCTCGTCGACTCCAGATACCAGCAAATCAAGAAAACTCACGTCAAACAGATTATCATGATAGTTACAACGGATATATTGGCATAGATGCTGATAAAAGGCAACCGTCATTGCAAAGCTACCCTAATTCACAGTATTCCAACATCCAAAGAAAATTAGGTTACGGTTCTTATCCTGTAAATAGTAATCCCTATCAGACAACTTACTTGGGTTCGACTTCCTTGAAAAGAAATTATAGACACATCCAAGATAAATCTCAAAGAAAGGTTAAAAAAGAAGACCAATAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006860 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR051355 all species →	Family	Notch and Slit guidance protein	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45836 all species →	SLIT HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074607940.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074607940.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

52TPM > 0

2Conditions

11.2Max TPM

2.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	31	3.11	10.44
all_coral_tissue · baseline	38	21	2.47	11.24

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.44
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.94
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.64
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.20
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.93
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.67
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.59
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.28
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.54
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.49
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.37
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.05
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.92
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.35
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.35
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.30
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.23
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.14
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.69
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.44
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.14
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.88
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.84
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.74
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.56
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.26
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.11
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.88
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.83
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.76
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.32
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.24
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.35
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.54
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.19
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.93
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.76
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.67
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.36
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.22
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.01
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.99
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.88
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.77
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.62
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.47
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.44
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.11
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.77
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.73
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.45
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.37
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.