Gene detail

Detailed information of XP_074608048.1 in Acropora palmata

Genomic Location: NC_133893.1:206196...215697
NR annotation: XP_015757411.1, PREDICTED: protein disulfide-isomerase A6-like [Acropora digitifera]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074608048.1

ATGAGGCTTATTTACGGTATATTGTGTTCTTGTATGGTGGCTTTGTGCAGAGCACTTTATGGTTCCCACACGGATGTCGTGGAATTGACAGCAAATAATTTTAATTCTCTGGTTATGGATAGTGATGCAGTGTGGCTTGTAGAATTTTATGCTCCATGGTGTGGACATTGTAAAGCATTGGCTCCTGAATGGACCAAAGCAGCTTCTGCCCTCAAGGGCGTGGTAAAGGTTGGTGCAGTTGATATGGACAACCAAATGAATCAGCAATTAGGAGGCCAGTATGGGATCAGGGGATTCCCTACAATCAAGGTTTTTGGATCCAACAAGAACAGCCCAAATGATTACAATGGTGCTAGAACTGCTCAGGCCATTGTTGATTCTGGTTTAAGTGCACTTAAATCTATGGTTAAAGACAAACTTTCTGGAGGTGGAAGGAGATCTGGATCCAGTGGAGGAAAAAGACAGGATGGTGGAAAAGCTGGGGATGAAAAGGATGTAATTGAGTTGACAGATAGCAATTTTGAAAAGGAAGTACTAAATACAAAGGATTTGGTGTTGGTTGAGTTCTTTGCACCTTGGTGTGGACATTGTCAAAGATTAGCTCCTGAATGGGCAAAGGTTGCAACTGAGCTGAAAGGAAAAGTCAAAGTTGGAGCTCTTGATGCTACTGTTCACACTGTCACCGCCGGTAGGTATGAGATCAGAGGATATCCAACCATTAAGGTGTTCAGTGCAGGAGCAAAAGATTCCCACAGCATTGAGGACTATCAGGGTCCTAGGTCAGCTTCAGATATAATTCAGTTCGCTTTGGACAAGCTTGCAGATTCAATTGAACCACCAGAAGTGTTGCAGATTGTAAATAGTCAAGTGGTAAAAGAGAACTGCGAAGAAAAACCAATCTGTATTGTTGCTGTTCTGCCTCACATTCTGGATTCAGGAGCATCTGGACGGAATCAGTATCTGGAAATTATGAAGTCAATGGCTGAGAAATATAAGAAGAAAATGTGGGGGTGGATCTGGGGTGAGGCTGGTTCTCAATCAAAACTTGAAGATGCTCTTGGTTTAGGTGGATTTGGCTATCCTGCAATGGCTGCTGTCAATGCACGTAAGATGAAATATGCCACTTTGAAAGGACCCTTTGACAGTGCTGGTGTTGATGAGTTCCTGAGAACTGTATCAGTTGGGCGTGGCTCCACCTCACCTGTCAAAGGTGCAGCTCTTCCCAGTGTAGAGGAAACAACTCCTTGGGATGGCAAAGATGGGGAGTTACCAGTGGAAGAGGACATTGATTTATCTGATGTAGACTTGGATGGAGATGAAGGCCCAACAAAAGAGGAATTGATATTTGGTTCCACACTCATGACAGAACTTAGACAACCTTTTGGTTGCACTTCCATCCCGTTGCCATTTGGAACTGTGCAGAGGTGGGGTCTTGGCGTGGTAAAGGTTGGTGCAGTTGATATGGACAACCAAATGAATCAGCAATTAGGAGGCCAGTATGGGATCAGGGGATTCCCTACAATCAAGGTTTTTGGATCCAACAAGAACAGCCCAAATGATTACAATGGTGCTAGAACTGCTCAGGCCATTGTTGATTCTGGTTTAAGTGCACTTAAATCTATGGTTAAAGACAAACTTTCTGGAGGTGGAAGGAGATCTGGATCCAGTGGAGGAAAAAGACAGGATGGTGGAAAAGCTGGGGATGAAAAGGATGTAATTGAGTTGACAGATAGCAATTTTGAAAAGGAAGTACTAAATACAAAGGATTTGGTGTTGGTTGAGTTCTTTGCACCTTGGTGTGGACATTGTCAAAGATTAGCTCCTGAATGGGCAAAGGTTGCAACTGAGCTGAAAGGAAAAGTCAAAGTTGGAGCTCTTGATGCTACTGTTCACACTGTCACCGCCGGTAGGTATGAGATCAGAGGATATCCAACCATTAAGGTGTTCAGTGCAGGAGCAAAAGATTCCCACAGCATTGAGGACTATCAGGGTCCTAGGTCAGCTTCAGATATAATTCAGTTCGCTTTGGACAAGCTTGCAGATTCAATTGAACCACCAGAAGTGTTGCAGATTGTAAATAGTCAAGTGGTAAAAGAGAACTGCGAAGAAAAACCAATCTGTATTGTTGCTGTTCTGCCTCACATTCTGGATTCAGGAGCATCTGGACGGAATCAGTATCTGGAAATTATGAAGTCAATGGCTGAGAAATATAAGAAGAAAATGTGGGGGTGGATCTGGGGTGAGGCTGGTTCTCAATCAAAACTTGAAGATGCTCTTGGTTTAGGTGGATTTGGCTATCCTGCAATGGCTGCTGTCAATGCACGTAAGATGAAATATGCCACTTTGAAAGGACCCTTTGACAGTGCTGGTGTTGATGAGTTCCTGAGAACTGTATCAGTTGGGCGTGGCTCCACCTCACCTGTCAAAGGTGCAGCTCTTCCCAGTGTAGAGGAAACAACTCCTTGGGATGGCAAAGATGGGGAGTTACCAGTGGAAGAGGACATTGATTTATCTGATGTAGACTTGGATGGAGATGAAGGCCCAACAAAAGAGGAATTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q63081	Protein disulfide-isomerase A6 OS=Rattus norvegicus OX=10116 GN=Pdia6 PE=1 SV=2
Q15084	Protein disulfide-isomerase A6 OS=Homo sapiens OX=9606 GN=PDIA6 PE=1 SV=1
Q922R8	Protein disulfide-isomerase A6 OS=Mus musculus OX=10090 GN=Pdia6 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006934 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00085 all species →	Thioredoxin	Thioredoxin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017937 all species →	Conserved_site	Thioredoxin, conserved site	Interproscan
IPR013766 all species →	Domain	Thioredoxin domain	Interproscan
IPR005788 all species →	Domain	Protein disulfide-isomerase, thioredoxin-like domain	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45815 all species →	PROTEIN DISULFIDE-ISOMERASE A6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005788 all species →	Cellular Component	endoplasmic reticulum lumen	Interproscan
GO:0015035 all species →	Molecular Function	protein-disulfide reductase activity	Interproscan
GO:0034976 all species →	Biological Process	response to endoplasmic reticulum stress	Interproscan
GO:0003756 all species →	Molecular Function	protein disulfide isomerase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09584	PDIA6, TXNDC7; protein disulfide-isomerase A6	EC:5.3.4.1	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074608048.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

82TPM > 0

2Conditions

295.5Max TPM

135.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	46	142.90	295.49
all_coral_tissue · baseline	38	36	125.36	219.25

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	295.49
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	294.48
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	286.96
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	285.86
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	280.05
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	252.81
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	234.82
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	229.91
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	227.60
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	227.47
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	207.65
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	206.24
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	203.73
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	202.10
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	199.68
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	197.91
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	195.43
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	193.75
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	189.31
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	182.59
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	175.06
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	173.76
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	173.47
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	172.65
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	170.24
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	162.96
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	86.00
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	73.10
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	68.46
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	65.89
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	64.26
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	58.20
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	53.89
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	52.80
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	46.68
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	44.72
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	38.66
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	38.07
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	36.05
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	35.15
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	34.70
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	33.59
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	32.86
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	31.87
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	31.78
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.92
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	219.25
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	208.30
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	204.83
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	199.51
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	193.65
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	182.70
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	176.03
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	175.48
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	169.57
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	167.45
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	162.88
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	153.28
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	153.13
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	152.44
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	151.94
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	147.97
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	139.23
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	134.76
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	133.26
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	131.70
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	125.91
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	119.56
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	119.09
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	118.96
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	118.74
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	114.77
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	107.08
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	89.65
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	88.61
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	79.70
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	70.31
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	62.65
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	56.22
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	52.26
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	45.39
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	37.37
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.