Gene detail

Detailed information of XP_074608805.1 in Acropora palmata

Genomic Location: NC_133883.1:3141451...3149927
NR annotation: XP_029192059.2, E3 SUMO-protein ligase ZBED1-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074608805.1

ATGGAGAAAAATATACTAGATGAAAGAGCTGCTTCTAGGGTTGCACAAATCTCCAATCAGCCAGTCACTCCTAGTGAACAAGATGTTGTGCGAATATTACTGGCACAGCAACAGCAACCTGAAGTTGACAGTGGTAGAGCGGAGGAGACAAATGCTGCTTGCAATGCTATTATAGTTACCTTAGAAACACAGAAAGGTGTTGAAGGGCATGAGAATGGCAAACCACTTGTGTTGGAATCAGTAATGGCGAATTCTGTGCCGGTTGAAACTAATTTTCAAGATGGAAACATGTCATGTGAAGACGAAAGCCACTTAAGATGCAAAGTTGAGGGCGGCAGGAAGCCTTTTGGCACGATGGAAGGGCTCAAGTGTCACGTTCGTTCAGACACAGAGGAAAGGCCCCATATTTGTCCCCAGCAAGGTTGCGGCAAGGCATTCAAGGCATTCGGAGATCTACAGAAGCACAAGTACCGACACACAGGTTCCGATGGTAAACGCCAAAGGAGTGCTGTTTGGCAGTACTTTATCAAGTCAGAAAATGTTGGAATGTCCCAGTGTACAATCTGTTCCGAGATAGTCAAGCATGCAAATAATACTTCTAATCTGTTTAAGCATTTGAAAGCAAAGCATCGAGAAGAGTTCCAGCAAGCAGAAAAACAAAGAGAAGAGGACCAAGAGACAGCGGCCAAAAAGCGTAAGACTGCGCCCAATCCAAAGCAAACAACACCGATCAAATTGAAGGTAGAAAATGCACAGAAATACCCCGCAGACTCCACGCGACGCAAAAATGTCGATGAGGCCGTTGTGCGAATGGTAGCAGTCGATATGCACTCCCCTTCAATCGTAGAAAATGTCGGTTTTCAATCCCTTATACAACTGCTAGATCCACGCTACATTTTGCCTTCCATGAAGGATCTCACGAAGACTCTGTTGCCTAGCATTTACTCTACGAAGGTTGAGGAACTGAAGCAAGAACTTGCCCAAGTCTCACACCTGGCATTGTCGAGCGAACTTTGGGAATCTGCTACGACAGAACGCTATCTAACGATCTCTTGTCATTTTCTTAACTCTTCTTGGGAGCTCAAGTCACTTGTTTTGGAAACGATGCTTTTCACAACATCACCCTCGCCCGAAATCATTGCAGGGTCGCTCACTAGAATGTTGCAGACGTGGGGAATTTTGAAGAAAATCGTTGCCGTCGTCTCCGAAGATGCTTCTAGTGGTATCTCTGCCGCAGCCAAAGGCCTTGGCTTGACGCACGTCCCATCCTTTACAAGCGTGCTCAACCTTGTGGTCTCCGAAGCAATGAAAACGGATGCCAGTGTCCAAGAGCTGAGGACAAAGTGCAACCAAATGGTGTCTTTTTTCCATCGAAATATAAAGGCTACGGAGAAACTGGTCGAGATTCAGTGCCAACTTGGATGTTCAGGACAAGAGCTTGTGGAAGAGGTGGAAACGAGGTGGAATTCTACCTACCACATGTTCCAAGAAATCACGGAGCAATACGAAGCCATAACCACAGCACTATGTTTGTCCAATGGAAATTCTTTATGTCTCTCATCCTCTGATGTAGGCGTGCTGAGGGCTTCAGTAGCAGTTTTGAAGCCCTTTGAGGCAGCGACCACAGAGGTTTCTTCGGAGAGGCGTGTGTTTGTTTCTAAAGTCATTCCACTGGCCACATCACTGGAACATCTGACGTCCAAAATTGACACAGAGCAGGCTCTTGCTTTGGAGTTGCAGGCTCAAATGCGCCTCCACTTTGCAAATTTTAGGATTTCACACCCTTTGATAATGGCCACCATGCTAGATCCTCGCATGAAGAAACTGGCCTTTCACGATAGTGTAACGCCACGCCAAGGAGAGCTTCGGATTTTACAGGAGTTGTCAGAACTTGTCCCAGCAGATTCCAACCAAGATACGCAGACCGCAGAATCATCTGCTGCTTCAGGCTTATGGGACTTTTTCGATGCACAGGTAGCGAAAGCACATTCGCCAAGCAAGGGAATGACAAATGCTAAGCTGGAGGTCATGAGGTTCTTTGAGGAACCTGTTTTGCGGCGGAACGAGGATCCTTTGGAGTGGTGGAAAACTAACCAGAGCAACTATCCGCTACTGTCTCAACTAGCAAAGAAATACCTCTGCGTACCAGGCTCATCTGTTCCTGTTGAGAGGCTGTTTACTCAGAAAGGAGAACTGTTTTCCCGGAAGCGTAATCAACTAAATTCAAACGACGTGGATTTGTTCTTGTTCTTGAATCAAAACTTATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75132	Zinc finger BED domain-containing protein 4 OS=Homo sapiens OX=9606 GN=ZBED4 PE=1 SV=2
Q80WQ9	Zinc finger BED domain-containing protein 4 OS=Mus musculus OX=10090 GN=Zbed4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000431 (this species only)
Transcription factor family	zf-BED · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05699 all species →	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan
PF02892 all species →	zf-BED	BED zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR008906 all species →	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR003656 all species →	Domain	Zinc finger, BED-type	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR052717 all species →	Family	Vacuolar processing and transposase activity regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46169 all species →	DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24637	ZBED1; zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1)	EC:2.3.2.-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.