Gene detail

Detailed information of XP_074608933.1 in Acropora palmata

Genomic Location: NC_133894.1:17084389...17106057
NR annotation: B8VIW9.1, RecName: Full=Fibronectin type III domain-containing protein; AltName: Full=Neuroglian-like protein; Flags: Precursor [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074608933.1

ATGTGGAAGATTCTGTTGGCAATTTCCATTTTCTCACTCTCTAACCTATCAAACGCTCAGCAACAACCAAAAGTTGCCCCTCCACAAATCACCAAATTTTTAGCAGAGGATAAGGTTGCCCCAGAGGAAGTGAAGTTTCGCGTTGACGATGTGTGGCAGTTGGTTTTACCATGCCGTGCTACAGGATCAAATCTGTTGAAATGGGTTTGGAAGCACAATAACGTTGAGATTAATAGAAATAAATTTATTTTTGATGATGATTGGGAGCTCCTTTCAGATGGCACTCTGAGGGCCAGGAGCCTCAACATTTCAGACAAGGGAACCTACCAGTGTTTTGTCGAAGATACTGTCACTAAGGTCTCCACATTCAGCAGGAAGCTAAGGGTTGAAGTAACAGCTGTAGGAAATTTCAAGGATGATCAAGACTTCAAAAGAAGTGTTAAACTTGGCGAGCCACTAAATGTAGAGTGTCCTCCACGTGGCCCCAACTTTGGTGTCACTTTTGCGTGGACAGCAAAAACGGCTCGCAACATCCAATTTTCTATAAGTAACAGGGTTGCCATTGATCCATCAACTGGAAACCTCCATATTATGTACGTTACTGAAGATGATGTTTCAACTGTCAATGCCTTGGAGGGAATCCGCTGCACTATTTCTGCTGCCAACACATTTTACTCATCTGGCGCATTGACTCTGCAGATACTACCAGGTAAAGAAATAAAATTAAGCAGTCCTTCTTTTACTTCATCAACTTCATCCCCTAATGAAAACGCTGTTGAAGGAAGAATGAAAGATTTGTATTGCGAAGCTACTGCAAGACCTCCTCCCAAATTAGTTTGGAAGAAAAATGGGGTTGTACTTAAAAGCGGAATTGATTTCATTGAGATCCCTGAAGCCTTTGAAGGACGGCTTCTTAGCATCACAAGTGTGAAGGAAAGTTTGCATGAAACTACATTTAGCTGCGAGGCCAGCAATAATCAAACCATAGCTACTGGTCCAGCACAACGTAATTTCGTACTAAATGTTGAAGTTGCCCCAAGGTGGACCTCAAAGCCGCCAGATTCACTAAAAGAAATTCCTATATCTTCTAATGGAAACTTGAGCTGTGACGTTTATGCTCAACCCGAGCCAGTAATTAAATGGTACAGGGATGGAAGAGAAATAACCCAATCAAGCTCAAAAGTAGAAGTCAGCGGTTCGAAGCTGCTTTTTAAAGACACCACTTTAGACGAGGCCGGAATTTACCAATGCTCGGCAGAAAACGTTCATGGAATGATTGTGTCGTCCACTTATGTCAAGGTCCTCGCCATTGCACCATCATTTAAGAACGGCTTTGGTCCTTTTTACCTGTTTCAAGACAGCGAAGGAAGGTTGAAATGCGAACCAGAAGCCGCCCCAAGACCAAGCACATTTAAGTGGTTTGACAAGGACGGTGCCGAGATCAAATCTGGAAACGGTTACACGATAGAACAAGATGGCACTTTAGTGATAAGCAAGGTTGAACGTAGCCAACATGCAGGAAAATTTTCCTGTTATGCTAAAAACTTCCTGGGAAATGCTACAGCTGAAGGGACGGCGACCGTTTACGATAGGACCCGAATCGTACGTGGGCCAAGTGATTTGTCGGTCAACGAAGGCACGCGAGTAGACTTGCGCTGTGAAGCCGTAGCAGACAGCTCGCTGGAGTTGCACTACACCTGGAAACGAGACGACGCCACTATCGAATACAACCGGAGGGTACAGTGGTTGAAAGATCAGAACGTTTTGACGATTGCTGATCTTACTGTCGAAGACGCTGGGATTTACACTTGTGTTGCGTACACACCTCAACCCAAGTACTCTGAAGCCAAGGCTTCTGCTATAGTTAATATCGCAGGAGCTCCTTTCCCTCCGACAAATTTAATGTTGTCTTCGGAGTGCCAAAACCGAAACACGACTCTTTCTTGGGTAACTGGTGAATCAAACAACGCGTCCATCCTTTATTTCTTGATCGAGCGAAAGTCACAGTACGCTGATGATTTCTGGCAAGTTATTGCCAATGTCACAAACCCCAATGCCACGTCTCATCCGCTGGTCAAGCTGGCTGGCAACGCGGACTTAGCATTCCGGATCAGAGCTGTCAATCGGTTCGGACCAAGTCGCCCTAGCGAACCCACAACCTCGGTTTGCCGAACAATCCAAGCAGTTCCTGAAAAGTGGCCCGACAATTTTAGAGGAGTCCCTGGCAAAGCTGAAGAACTCACAATCGCTTGGACTGCCATGCGCAGGGTGGAATGGAATGCACCGGGTCTCTACTATAAGCTATGGTACAGGAGAGTGAACTCAGGCGATGCATTGGTCGAGGTCCACCGCGAGGCTAGCAGCGACAGTTTCGTTGTACCCGACGCTGGTTATTACGTCCAATGGGAGTTTCAGATTCAAGCCATTAACGAAGTTGGAGAGGGACCCAAAAGTCCCCTCGTGAAGCAATTCTCCGGTCAAGATCCCCCGACAGGGAAACCGGAAGACGTCACTGTGGGAACGATTACAGCCCGCAGTGTGGAGTTGTCATGGAAACCAGTGACGTTTACCAGAGGGAGTGTGGATGGATATAGGATCTACTTTTGGGGTGAGAGCCGTGTTTCTGCCAAGAGACGCCGTCGTGCTATCCCAGGTTATGCATCGGTCACTAACGTAACGGGGGTAAACACAGAGAGATACACTGTCACCGGGCTGAAACCTTACACTAACTACAAGTTTGTCATCACTGCATATAACAGCGGAGGCAATGGACCGGAGAGCGATCAAGTGGCTGCTGATACAGATGAAGCCGCACCTGGCCCACCCTCGGATGTGCAGGTCTTTGTCTTTGCGAAGTACATTCTGGTAACGTGGAAGCCACCGTCAGAACCAAACGGCGTCATCACAAACTATCGAGTCGGGACAGAGACGTACACTGGCTCCCAGCCGACGGAGGTGACTGTAAATATGGAGGAAACCGGAGTTGAAGCGCGGAGAAAACTACTGCGAAACCTGAAGCCGGAAACCAACTATGTTGTGGAGATGCAAGCTGCGACTAGCAAGGGATGGGGAACTAGTTTTCGGAAGACTGAAAAAACGGTGGCGTGGGCTGCACCAGCAAAACCAGAGAAGCCCATAGTGGAAGGCTCAGCAGTGGATGAAGTGAGAGTTGATTACAAATTTGGTCTGGGAGGAGGCTACACTCACGAGTTTCTGGTTATGTTCAGGAAAAAAATCGAAGGAGAAGAATTTCAAAACACAAGCTGGGTGGACCATTTCCAGCAGCAGAGCATCATTATCGGAAACCTGGATCCAGAATTGTACCAATTCAAGACTGTTGCCAGAAATGACTATCCGAGTGAAGAAAATCCCCAGGAAAGCCCAGCTAGCGACATCACCGAAGCACGACCTCGACCTGGTATCTCCAACGCAGGAAAAAGAGTATCAACGCCGATTTATCAGAGTGCCTGGTTTATTGCTTTGCTGGTGTTGATTGCTCTTCTGTTGCTGGTTTTGCTGATTTTTGTGCTGTATACTCGCCACCAAGGCGCCAAGTACCTAGTTGGCAAGCGGGAAAAGAAGAGAGCTGCCGCACTCATTGATCGCGAACACTTTGACGAAGAAGAAGGATGTTTCAGCAATAATGGCCGCGCGGACCACCCTCCACCTTATCCAAGCCAGGGCTCGTTGCCAAGGGCCGCAGATTCTGATCGCGACAGTCTGGATGACTACGGTGAGGGACCACAATTCAACGAGGATGGCTCCTTCATAGAGGAATATGGCGACGAGAAAAAAGCACCTCCTGAAGAAAAGGACCCTTCTTCATTGGCAACTTTTGTTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B8VIW9	Fibronectin type III domain-containing protein OS=Acropora millepora OX=45264 PE=1 SV=1
Q90478	Neural cell adhesion molecule L1.1 (Fragment) OS=Danio rerio OX=7955 GN=nadl1.1 PE=2 SV=1
Q8IWV2	Contactin-4 OS=Homo sapiens OX=9606 GN=CNTN4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000412 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF00047 all species →	ig	Immunoglobulin domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF13882 all species →	Bravo_FIGEY	Bravo-like intracellular region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR013151 all species →	Domain	Immunoglobulin	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR026966 all species →	Domain	Neurofascin/L1/NrCAM, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44170 all species →	PROTEIN SIDEKICK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06756	NRCAM; neuronal cell adhesion molecule	-	Cell adhesion molecules	ko04514	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074608933.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

83TPM > 0

2Conditions

494.1Max TPM

124.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	46	143.44	494.14
all_coral_tissue · baseline	38	37	102.43	192.04

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	494.14
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	304.06
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	294.89
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	275.96
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	250.79
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	241.62
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	232.77
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	232.33
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	210.54
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	201.50
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	198.52
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	197.63
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	193.71
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	188.22
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	182.48
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	181.31
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	180.92
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	180.60
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	178.83
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	175.94
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	173.91
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	164.54
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	161.08
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	132.72
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	125.25
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	123.68
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	121.65
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	103.47
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	90.71
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	90.34
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	89.13
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	82.14
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	81.84
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	50.06
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	48.86
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	47.89
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	43.51
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	38.79
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	38.24
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	38.18
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	37.57
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	32.07
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	31.00
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	23.22
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.29
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.24
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	192.04
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	170.57
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	166.50
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	162.83
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	154.33
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	152.90
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	152.20
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	145.62
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	136.08
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	134.39
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	133.99
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	133.95
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	133.36
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	132.02
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	130.27
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	127.09
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	121.65
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	112.65
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	109.78
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	109.28
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	105.38
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	102.70
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	100.25
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	99.70
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	91.26
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	82.36
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	77.51
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	74.81
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	57.85
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	56.58
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	55.66
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	51.43
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	39.89
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	32.22
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.15
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.99
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.22
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.