Gene detail

Detailed information of XP_074608934.1 in Acropora palmata

Genomic Location: NC_133894.1:17114591...17139440
NR annotation: XP_044183085.1, fibronectin type III domain-containing protein-like isoform X2 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074608934.1

ATGTGGGGAATCTTACCATCGATACTTATTCTTTACCTCGTGGCAAAAACGAAAGGTGCAGACAGACCGAAAGACGCTCCTCCTCAAATAACACATTTTCTTGCCAATGACCTCGTGAAACCTGGACAAGTGAGGGGTTATTTTACTCTTCCATGCAAAGCTACGGGAAAAAATCTTAAGTGGTCGTGGAAATTCAACGGTGGGCCTCTGCCAGATAAAGTAAAAATTGTAAACGATACGTTAGTAGGTGGATCGCGTGATAACACACTGAATGTCGCGCACAGTGGAAGGTACCAGTGTTTCGTGGAAGATACGAAAAACAAGGTGTCGACTTTCAGCCGAGAGATAGAAGTGAAAGTAACAGTTGTCGGATACTTTGATGTCAAGAGTAAAGAAAACGTGAAGCAAAAAGTTAACATTGGTGAACCGTTTGTGTACAACTGTCCTTCGCATAGTCCAACCTATGGAGCAAGCTTTTCGTGGGAAAGAATAAAAGGAGATGTCCAGCTGGAAAGAAATGAACTCACAGCCATCTCGCCCGACGGAACGCTTTTCATTACTTCCATAACTAAGGACTTCATTGAATCTATCAACGGTTCCAATGGCATAAGGTGTAAAATCTCTGCCTTAAATCAATACTACGATTCTGGGGTACTAACTCTCCGCGATGGAAAACAAAAAGTCCCTATTCCACCTGCTAAGTGGGGCACAAAACCGCCTAAGACAGTTGTGGCCATCGAAGGAAGGGGGAAGGAGATGTATTGCATTGCTCTTGGCAAAGGCTCGCCAACTATAGTTTGGAAAAAGAATGGGAAACAGCTGGGAACTCAAAAAGGCCTCGAGACTCCCAAAGCCTTTTACAACAGGCTTCTGAATGTCACGGCCGCGGAAAAGAATTCTCATGAAGATAATTACACTTGCGAGGCAGTAGTCGGGCAAAATACTGTTTTGACGCACGAATTTGAACTGTATGTGCAAGTTATTCCAAAATGGAAGACAGGACCTCCTGCAAGCAAAATCGACATTCGTATACATGAGAAGAGAACTATCTTTTGCGATGCGATAGCAGATCCACCGCCAACGTATTCGTGGTACAGAGATGGCACGCTGATAACTAAAGCGAGTTCAAAAATCAGAGCCGAAGGAAACAAGTTGCATTTTGATAACGTATCTTTAAAGGAAGATGGAATGTACCAATGTGTTGCGAGAAATAGCATTGGAATGATCGTGTCTTCTTCCTGGGTGCATATTTTAACACAAAAACCGTCTTTCGAAAGGAATGGTTTAGGACCCTTCTACTTATTCCAAAACACTACAGGACGACTGAAATGCCACCCGGAAGCTGCTCCTCGTCCCAGCACTTTCAGGTGGTCCAAGGATGGTCAGGTACTCTCTGGCGGGCCTTACCGCTTGCAACCAGACGGCACCCTGGTGATAACTGGCGTCGATTCCAAACGCGACGCTGGTGAATACGAATGCTATGCTGAGAACCTCCGTGGAAGCGCCACGGCGAAGGCAAATGCGACAGTTTTTGAAATGACAAGAATAATAATTCCGCCAAAGAGCGTGAAGGTTCATAAAGCTTCCCGTGTTGATCTTCGTTGCGAAGCAGAAGCTGACAAAAAGCTCAAATTGGGCTATTACTGGATAAAAGACGGAGAGCGTTTGGAGTCTAACGAGAAGATGGAATGGAGAGAATCGCAAAACGTTTTGACGATTGCAGACATGACCTTGCTTGACTCTGGTGTTTTTACTTGCGTTGCGTTCACACCGGACCCGAAGAAATCCGAAGACCGAGCATCGGCAATCATCGATATCATAGGTGTACCAGACCCTCCAACAAATCTCATAATTTCGTCGAATTGTTCAAACCGTACAACAACTCTGTCATGGAAGACTGGTGCAGCCAACAAGGCTCCAATCACGCAATTCTTAATTGAGCGGAAAGCAACTTTCAAGGAATTCCCTGATAGCGCCTTTCAAGTCATTGCGGAGGTCAATGATCCTTCCGCGGTATCCTTCTCGCTCGAAAAACTAGCTGGGGCAGCCACTCTCCATTTCCGAATGAGGGCGGTCAATCGCTTTGGGCCAAGCCGTGTGAGTTTGCCCACGACAAGTCTGTGCATAACCAAGGGTGACGCTCCTGACAAATGGCCAGAAAATCTCAGAGGAATTGGAATTAGATCCAACACACTGGATATCACATGGACGCCCATGCCAAGAGTCGACTGGAACGCTCCTGGTCTATACTACAAACTGTTCTACAAGAAAGCGAGCGACAGAGAGATGGTTGATGTCAAAATTCCTGATCCCGCTAGCAGTCTATTCAAAGTACAAAATCCCGGATACCATGAACTATGGGAATTCCAGATCCAGGCTGGAAATGACGAAGCCCCGGGTGATATAAGCCCGATTGTAACGGCTTATTCGGGACAAGACCCACCCGCTGGAAAGCCCCAAGGTGTTACCGTGGGAACCGTAACGGCGCGCAGTGTTGAATTGTCGTGGCAACCTGTCACTGTTTCCAGAGGAAGTGTGGATGGATATAAGATTTATTATTGGGGCCAAAGCCGCTCGGTCAACGCACGAAGACGAAGGCGTGCAATTCCAGATGATGCACCCTCTGTCGTTGCATTGGGTGGAAACACGCAAAAATTTGTTGTGACAAACCTAACGCCGTACAGCAACTATGACATAATAGTAAAGGCGTTCAATAACGGAGGAGAGGGACCACCAAGTGATGAGGTGTCCGCAGAAACAATCGAAGCCGAGCCCGGACCACCATCAGTAATTATATACCCTTTCGCTAAATACATCCTCGTCACATGGAAGCCGCCATCACAACCGAACGGCATTATTACCGACTATCAACTAGGATCCAAGGATTACGCCACCGGTACAGAACTGAGTAATGTTGTGGTTCAGAAGCAATCGGTTGGCGAAGATGCACGAAGGAAATTGCTCGCTAATCAGAAACCGGAAAGCAACTATTTAGTGGACCTACAAGCACGGACAGTAATAGGATGGGGTACGAGCGTCAAAAAGGCAGTAAAAACAGTAAAATGGTCCGCTCCAGCTAAGCCCAACAGACCCAAAGTCCAAGGACTTGATGTCGATCGAGTTAAGGTGACTTACATATGTGGTCTTGGTGGAGGCTACACGCACGAGTTTTTGGTAATGTACAGGAAAAAAGTGGAAGGAGAAACGTTTCAAAACACAAGCTGGGTGAACCATTTCAGGACGCAGAGTGTTGAAATTGGAAACCTGAGTCCGGACCTTTATGAGTTCAAGACTGTAGCGAGAAATGATTATCCCGATCAAGTCAACCCTAAAACGAGTCCAGCAAGTGATGTCACAGAAGCCAGACCCTTCCCCGGTGTCGTCAAAACAGGAAAGTATGTGACAACACCTATCTACAAGAGTGCTTGGTTTTTCGCCTTAGCTCTCCTTGCTCTTCTTCTGCTTCTTGGTGCTATTATTTTTATTTCTTACACTCGACGTAAAGGGACGAAATACCAGGTTGGTAAACGCGAAAAAATGAGGGCGGCTCTTATTGAAGATGAGGAACCTTCAAACCAGTTGGATGGTCCCCCAATCAATCTCAGACGGAGCGAGCAACCCCCTAAATACAAGAGCGACAGTTCATTGAGCAGGGACAGCGACCGTGATAGCTTGGACGATTATGGCGAGGGCAAGTTTAACGAGGATGGATCGTTCATACAAGAATACGGTGACGATAAAACCGAAACTCAAGGCGAAAGGGACCAATCAGCGCTCTCCACGTTTGTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B8VIW9	Fibronectin type III domain-containing protein OS=Acropora millepora OX=45264 PE=1 SV=1
Q0E9H9	Cell adhesion molecule Dscam1 OS=Drosophila melanogaster OX=7227 GN=Dscam1 PE=1 SV=1
Q4VA61	Cell adhesion molecule DSCAML1 OS=Mus musculus OX=10090 GN=Dscaml1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000412 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF13882 all species →	Bravo_FIGEY	Bravo-like intracellular region	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF00047 all species →	ig	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR026966 all species →	Domain	Neurofascin/L1/NrCAM, C-terminal domain	Interproscan
IPR013151 all species →	Domain	Immunoglobulin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44170 all species →	PROTEIN SIDEKICK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0030424 all species →	Cellular Component	axon	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074608934.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074608934.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

82TPM > 0

2Conditions

126.8Max TPM

59.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	44	65.96	126.84
all_coral_tissue · baseline	38	38	50.56	89.08

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	126.84
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	124.53
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	109.75
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	94.64
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	92.86
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	90.24
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	87.04
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	85.07
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	84.64
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	83.34
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	82.80
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	82.71
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	81.17
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	79.73
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	77.97
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	77.48
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	72.53
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	70.16
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	69.23
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	68.56
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	68.27
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	68.07
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	67.97
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	67.21
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	65.90
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	65.71
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	65.47
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	61.48
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	60.41
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	58.18
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	56.63
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	53.76
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	52.30
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	50.22
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	48.39
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	47.84
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	46.60
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	46.34
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	46.20
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	45.55
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	41.25
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	40.81
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	36.70
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	31.53
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	89.08
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	85.72
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	80.23
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	61.21
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	59.40
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	58.09
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	55.89
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	55.45
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	55.30
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	54.28
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	53.61
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	53.25
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	53.07
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	53.02
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	52.83
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	52.37
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	52.11
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	51.52
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	50.06
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	49.69
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	49.41
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	46.85
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	46.36
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	46.16
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	45.67
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	45.49
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	45.21
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	44.58
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	44.32
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	43.98
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	40.57
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	38.20
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	37.81
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	37.58
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	36.29
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	33.63
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	31.74
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	31.33

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.