Gene detail

Detailed information of XP_074609037.1 in Acropora palmata

Genomic Location: NC_133894.1:7961657...7977931
NR annotation: XP_029199756.2, polynucleotide 5'-hydroxyl-kinase NOL9-like isoform X1 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074609037.1

ATGTTGAAGACGACAAACATTTCTTCTAATTTTCTTGAATCTAGAGAATCTCTTAGAATGTCCTCACAAATGCCAGGTGGCATCAAACGAAAATTTAGGTCGCCAAATTCCGTGAAAAGCCACGTGCGTCGTTCAAAGCGGTTAGAAATGACAAGTCTTGCAAAGTTTATTGACCGCTTTGAACGACGAAGAGCTGCATTCAGTTGCGCTCTGGAGAAAACCAAATCAAGAAAACGGAAAAGGAAAATGCGTCCTGAAAATAACGGAGTTAGCAAGGGACTAAATAGGGTCAACGATCCAGCTTCTAATAGTGCGGCGGGAAAGAAAATTGACCTCAAAGGTAGGAAGTCCATTTTAAATTCTGACTTGCGATACAGAAAGGGTAGAAAGTCGCACGTTACTCAGACGATAATGAAGAGGGTGACTGGAAAAAGAAGGCGGACAGTGAAAAATGAACATAGCAAGAACAAAAGAGTCCATACAGAGAGTGGCACAAAGAAGAAAAGTCAGAATGCACCCAGGACACGTTTAAGAAAAAAGGCAAGAAAAGAGGTTTGTGGCAGTGATGGTTGCAGAGCTATGAACGAAGAAGAGTGCAGTGTTACAGCTGAGAATGAGAGTAGAGAGGAACAATTGACTTTAGAAAGTGTTTTTAGGCTGTCTAATGACTTGGCCAATTCTTGTTTACTTTTCCTCTCAAAGCGACAGAAAGTTTGTATCAAGGGCGTAGCTCAAATAGAGGTCTTATGTGGATCAACAGACATTTTTGGTTCCATTTTAAAACCTGGCCATGCACCAGTTGATATCTTTTCTGGTAGCACCTCAAGTCTTATTACATTTTCTGAATGTAGTCAGGATGATTTCTCAACTGGGGAAGATTTTTCTGGGAAAATGCAACATGCTTTAAGAAACCAGCCTCAAGAAGTAACGAAAATGATAATAGCAAGAGGAATGAAGATGGCTTCCATTCTTCTTTTGAAATCCTTGCAAACTGTTGAGGTGAACTTTGTCAGCAGTTTCAAGAAGTATGGTGACATTTTCAAGTTAGAACTTGGCAAGGATGTATTGCTGAACCCCACGGAGACATTGCTAAAGAATCAAACAGCTGACTTAGGCTTTCTTTTGGTGGAACCAGATGAGGCACGCTGCGCCATGTTGTCAATTCCAGATCAATGGAAAGCTGTTGGTAACTTAGTGAAATACGGCGAAACACGAAGGGCATCAAAAGGCAAGACGCCTGTTGTACTTATTTGTGGTGGAAAGGACGTTGGAAAATCAACTTTTGCAAGATATTTAACAAACTCTCTGCTTAACAGTCGCAAGGAACTTTTCTTTCTTGAATGTGACGTTGGACAGACTGAATTCACTGCTCCTGGGCTGATATCGCTCAACAAAGTGTCTTCTCCTTTGTTAGGTCCACCCTTTACGCACATTCAGCAACCTGAGAGGTCAGTCTTCTTTGGCGACGTAACACCCAGAGACAAACCTGACTTTTACATACAGTGTGTTCGTTACGTATACGAGACGTATGCCGGGAACTACAGGAAAAGCAAGATTCCATTGATCGTGAATACACTGGGATGGGTGAAAGGCATGGGTGTTCCTCTCCTGATCGATGTGATACACCTTGTTCAACCAACGCATATCATCCAGATGAACTACAATGATACGGCTACTGTGTATTACAACAGGGATCTCACCAAGCTAAAGGCTGAGTTGTCGATGCTGGTGGCAGAGTGTTTTAACGAATACAATCGCTCATGCGACAAAAGGGAGGAGGGTGAACATGAACAAGAAGGAAAACCAGGGGCACTGTTTAATCCAGTTATTTTACAGCTTGACGCGAACAAGGAAAAAGATAAAGTTCCTGTGTCCAAGTACACTGCAGCCGACAAGCGTGCTATAGCGTTGTTGTCATATTTAAGCAGGACAAACCCAGATCTAAGAAGTGGTGGTCCTGGTTCCAGAAGGATTACGTCTCTCCTCTCTTGCGTTCCTTATAGTGTGCCGTGGAACCAACTTGCGATTCACATCATGCATACAGAGACCGTTCCAAGGTCTCCAGCAAAAGGAATTCATTGTGATTGGACAGCGCAACTTCCTTGGGATCAAATTCTTTATTCTATCAACGCCAGTGTTGTGGGACTGGCAGAAGTGAGCGTAGATCAGATGCACCGACGAGAAGAGAATAACCTTGCGCCTTACTACTTCTTGGACAACCCAGTCGTAGAATGCATTGGATTAGGAATCGTGCGCAACGTTGATCCGATAAGGCAAGTCCTGTACGTACTGACACCCCTGTCCTTGGAAGCTCTCCAGCAAGTGAATACTTTATTGAAAGGCAATTTGGAAATTCCAGCTGCTCTTCTGTTATCGACGAAACAAGTAAATGGTCCCTACATCTCTACTGAATTTACCTACGAGCTGTATGGAGCTATGGCCAAGAAGCAGCGTCCTTTCCAGATAAGAAGACATCGCGTTCTCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5SY16	Polynucleotide 5'-hydroxyl-kinase NOL9 OS=Homo sapiens OX=9606 GN=NOL9 PE=1 SV=1
E7F654	Polynucleotide 5'-hydroxyl-kinase NOL9 OS=Danio rerio OX=7955 GN=nol9 PE=3 SV=1
E1BPN0	Polynucleotide 5'-hydroxyl-kinase NOL9 OS=Bos taurus OX=9913 GN=NOL9 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002961 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16575 all species →	CLP1_P	mRNA cleavage and polyadenylation factor CLP1 P-loop	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045116 all species →	Family	Polyribonucleotide 5-hydroxyl-kinase Clp1/Grc3	Interproscan
IPR032319 all species →	Domain	Polyribonucleotide 5'-hydroxyl-kinase Clp1, P-loop domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12755 all species →	CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000448 all species →	Biological Process	cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0051731 all species →	Molecular Function	polynucleotide 5'-hydroxyl-kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06947	GRC3, NOL9; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9	EC:2.7.1.-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.