Gene detail

Detailed information of XP_074609412.1 in Acropora palmata

Genomic Location: NC_133894.1:10603068...10606263
NR annotation: XP_044164470.1, uncharacterized protein LOC122948566 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_074609412.1

ATGAAGATAGCTCTTATGAGAAGGTACGATCTTACAGAAGATGGCTATAGGCGTAAATTTAGAATCTCAACGCCTGAGACTGACGGGAGTCCAGACCAGTTTATTGTTCGATTGTCCACTTACCTGATTCGGTGGCTCGAGTTATCGAAAACGGAAAAGACTTTTGAGGGACTAAAGGACTTCATTGTGAAAGAGCAGTTCATCAATTCATGTCCTAAGGAACTTGCTGCTCACTTGCGTGAGCGAGGACCTGAAACCCTAGAGGAGATGGCGAAAATCGCTGACCAGTACTTAGATGCGCATGGAAAGCACGTGCTTAGTCCCACATTGCAAATCTTAGTCCCAAACTTAGTCCCACACTGCAAATCGTGTGATATTTGCCAGAAGACAGTAAATAAAGGATCAGTTCCAAAGGTCCCATTACAGAAGATGCCACTAATCGATATGCCCTTCAAATGGGTAGCCATTGATCGCATTGGCCCGGTAAGTCCCTCTAGTGAAGCAGGCCACAGATACATCCTCACTCTCGTGGATTATGCTACGCGTTACCCCGAAGCGGTTCCTTTGAAGAATATTGACACTGAGACAGTTGCTGAGGCCTTAGTTGATATCTTCAGACGCCTAGGAATTCCACAAGAGATCCTGAGTGATTTAGGGACACAGTTCGTGTCTGACTGCATGAAGGAAGTTGCACGCCTTTTGAGTATTAAGCAGTTAACGACCACCCCCTACCACCCTATGTGCAACGGGCTGACAGAGAAGTTCAACGGAACTTTGAAGACCACACTAAAGAGATTGTGCAGTGAGCAGCCAAGACTGTGGCATCGCTACATTAACCCGCTCCTGTTTGCCTATCGTGAGGTTGCCCAGGAATCTACCGGATTCTCCCCCTTTGAACTTCTTTATGGGAGAGCTGTAAGAGGTCCCATGTTCATCCTCAAAGAACTCTGGACAAAAGAATTAGAGGTTCCGGAGGTAAAGAATAGCTACCAGTATGTCTTTGAGCTAAGGGAAAAGCTGGAGGACACCTTGAAAATTGCGCATGAAGAGTTGCAGAAAGCCCAGCAGAAGGGAAAACACTACTATGATCGCAAGACTAAAGTAAGAAAGTTCCAGCCAGGAGATAAGGTTCTTGTGTTGCTACCGACTGATCACAACAAGTTGCTGATGCAGTGGAAAGGTCCCTACGAAGTTAGCGCTGTAGTAGGCATCAATGATTACAAAGTTAGAGTGAAAGACAAGCTGAAGGTCTACAATGCTAACCTCTTAAAAGCGTACATCGAGCGAGAAGAGGAACTTGAAGACGCTACAGCCACAATCGCTGAGGGACTAGTGACAGGTGTTATCCGCAGTGATGAGACAAACGAACTCGAATTGGATTCGGATGAAGATGATAATGGCTTCCTCGAGATTGGTGGATATGTGGCGAAGGAATCCGTTGCAGACGTCATGACTGGTCCTGGTCTTAGCGACACTGAGCGTGCAGAATTTCTAGATTTGGCCCAAGAGTTTTCAAGCCTGTTGACCGAGGCTCCCGGAACCATGAACCTTGTTCAGCATCACATCAACCTCACGTCTAGTGAGCCCGTCAGGTCTAAGCCGTACCCAGTTCCGTACAGCATGAGGGAATCTCTGAAGAAAGATATAGAATGCATGATGAAGATGGGGGTCATTAGAGAGTCTAATTCTCCCTACGCCTCTCCGGTGGTGGTTGTAAAGAAAAAGGACGGTAGCAACAGAGTGTGCGTAGACTACCGGAAGCTTAACAAGCTAACTGTGTTTGATCCCGAGCCCATGCCAGCAGCTGTTGACCTGTTTCAGAAGTTGAATGGAGACAAGTTCTTTTCAAAGGTTGATCTGAGCAAGGGATACTGGCAAGTCACAGTACCAGAAGTAGACATACCAAAGACGGCCTTTGTTACCCGAGATGGTTCGTATGAGTTTCTGAAGATGCCTTCCGGCATGGTGAATTCCGCTGCTACCTTGAAGCGTGGGATGAAGAAATTTTTACTGGGACGATATCCTGGTCCACACCCGTACATGGGAGGAGCACCTCAAGACCCTTGGAGAGCTGTTTAG

Transcript

Protein

Uniprot

Uniprot term	Description
P20825	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
Q8I7P9	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02023	SCAN	SCAN domain	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003309	Domain	SCAN domain	Interproscan
IPR038269	Homologous_superfamily	SCAN domain superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46888	ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan