Gene detail

Detailed information of XP_074609448.1 in Acropora palmata

Genomic Location: NC_133894.1:15959436...15979522
NR annotation: XP_029185871.2, dynamin-1-like protein [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074609448.1

ATGGATCAGCTTATACCAGTTATAAACAAACTTCAAGATGTGTTTAATACCGTGGGAACGGAAGCTATTCAACTTCCACAGATCGTGGTAGTCGGCGCCCAAAGCAGTGGAAAAAGTTCTGTCCTTGAAAACCTTGTCGGGAGAGACTTCCTACCAAGAGGATCAGGGGTTGTCACCAGACGGCCCCTCATTCTTCAGTTGGTCCACACAGCAACCAAAACCAAAGCAGGGAATTCAAAGAAAGTGAACAAAGAGCCGACACCTGTAGAACATGAGGCGTATTTTTCAGACGATGAAGGTGATGCGTCAGAGAAAGAGAAAGAAGAGCAAGATGAGTGGGGAAAATTTTTGCACTTGAAAGAAAGGAAAATGACAGACTTTGATGAAATTTGTGAAGAAATAGAACGTGAAACTGAAAGAGTCACTGGAACCAACAAGGGAATTTCAAGTGAGCCTATTCGACTTAAAATCTATTCGCCCAGAGTGCTGAATTTAACTTTGGTTGATCTTCCTGGTGTAACAAAGGTTCCTGTTGGAGATCAACCCCTAGATATTGAAAATCAGATACGGCATCTTATTCTCCAATACATCAGTAATCCCAACAGTATTATCCTGGCTGTCACACCTGCTAACATTGATCTGGCCACGTCTGAAGCGCTTAAGATTGCCAGAGAAGTTGATCCAGATGGAAACAGAACTCTTGCAGTTTGTACCAAGCTTGATCTCATGGACCATGGAACTGATGCTTTAGATATCTTGTATGGCAGAGTTATTCCTGTCAAACTTGGAATCATTGGAGTGATGAACCGAAGTCAACTTGATATTAACAATAAAAAGAGTATCCAAGCAGCTCTTAACGATGAAGCCCTGTTTTTCCAAAAGAATTATCCTGCCTTGTCGTCACGAAATGGCACTCCGTATCTTGCACGTACCCTCAATAAGCTCTTGATGCACCATATTAGGAATTGTTTGCCCGAACTAAAGTCACGTGTCAATACGATGACGTCACAGTATCAGCATCTACTGCAAAGTTACGGCGAACCTGTTGAAGATAAGGGTCCTATGCTACTTCAGCTTATAACACGGTTTGCGTCATCTTACTGCGCTATCATCGAGGGAACAGCGCGCGACATTGAAACAACAGAACTTTGTGGTGGAGCTCGAATATGTTACATTTTTCACGACATCTTTGGGCGGACATTAGAAATTATGGATGCAATGGAAGGACTGGCTACTAGGGATATCCTTACTGCCATAAGAAATGCCACGGGTCCCCGGCCGGCCTTGTTTGTGCCTGAGATTTCATTTGAACTTTTAGTCAAGAGACAAATCCGTAGGCTCGAGGAACCCAGTCTCCGCTGCGTGGAGCTCGTTCACGAGGAGATGCAGCGCATTGTGCAACATGCATTTAGTCAGGTGATGGAGGTTAAAAGGTTTCCTCGGCTTCACGACAAAGTAGTTGAGGTCGTTACTCATCTTTTACAGCGCCGACTACCCTCCACAAACGAAATGGTGGAGAATCTAGTGAAGATTGAACTGTCTTATATCAACACAAATCATCCGGATTTTACAGATGGCGCTTCGCTTGTATCCACCATTACAATGAACCACGAAATGGAGCGGAAGCGCCTTAGCAAATTAGCACATACCACTTTGTCCAATGGACCTTTAGAGGGTGTTCGTTCCCAGACTTCCACTCCTGACTCAAGCCCCATCCACCGTCCCGACACTAACGTGCCATTTGGCTCCAGTGCTCCGGCAGAGAAAAATCCAGTAGCCTCATCCTCAAGTGGAGGACTCATGTCATGGGTTTCTGGCATCCGTAATCCTGGTACCCAAGGAAACGCGGACAAAACAAATGCGGTAGTGGGACCTAGCAAATCAGCTTCGGAAGAACTGGCGCTTCCATCAACGTTCCGACAAAGAGGGTTGACGGAAAGGGAACAAATGGACTCGGATATCATCCGCAAGCTTATTAAGTCGTATTTCGTTATTGTAAGGAAATCCATTCAAGATAGCGTCCCCAAGGCAATAATGTGCTTTTTAGTCAATTTTGTCAAAGAACGAATTCAAAGTGAATTGGTGGAGAAGCTTTACAAGAGTGAAATCTTTGACCATCTCCTCGAAGAAGCAGAACAAATGCACGTCAAGAGGAGAGAGGCCACAGAAATGTTGAAGGCACTGCAGAGAGCGGGGCATATTATCAGTGAAGTAAGAGATACACACATTTGGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K1M6	Dynamin-1-like protein OS=Mus musculus OX=10090 GN=Dnm1l PE=1 SV=3
Q2KIA5	Dynamin-1-like protein OS=Bos taurus OX=9913 GN=DNM1L PE=2 SV=1
O00429	Dynamin-1-like protein OS=Homo sapiens OX=9606 GN=DNM1L PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001302 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02212 all species →	GED	Dynamin GTPase effector domain	Family	Interproscan
PF01031 all species →	Dynamin_M	Dynamin central region	Family	Interproscan
PF00350 all species →	Dynamin_N	Dynamin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020850 all species →	Domain	GTPase effector domain	Interproscan
IPR003130 all species →	Domain	Dynamin GTPase effector	Interproscan
IPR019762 all species →	Conserved_site	Dynamin, GTPase region, conserved site	Interproscan
IPR030381 all species →	Domain	Dynamin-type guanine nucleotide-binding (G) domain	Interproscan
IPR022812 all species →	Family	Dynamin	Interproscan
IPR001401 all species →	Domain	Dynamin, GTPase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000375 all species →	Domain	Dynamin stalk domain	Interproscan
IPR045063 all species →	Domain	Dynamin, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11566 all species →	DYNAMIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0000266 all species →	Biological Process	mitochondrial fission	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005874 all species →	Cellular Component	microtubule	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17065	DNM1L; dynamin 1-like protein	EC:3.6.5.5	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074609448.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

74TPM > 0

2Conditions

68.0Max TPM

30.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	39	25.34	58.87
all_coral_tissue · baseline	38	35	37.08	67.96

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	58.87
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	54.34
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	50.51
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	44.03
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	42.31
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	39.75
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	39.46
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	38.21
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	38.06
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	37.29
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	36.67
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	36.63
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	36.11
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	35.35
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	35.30
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	35.01
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	34.50
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	33.23
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	32.80
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	31.90
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	31.57
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	31.18
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	30.53
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	30.50
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	28.53
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	26.07
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.86
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.54
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.34
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.02
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.86
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.58
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.42
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.00
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.82
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.45
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.10
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.14
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.99
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	67.96
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	61.33
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	59.77
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	54.90
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	54.79
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	51.90
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	51.68
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	51.49
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	50.94
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	48.60
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	47.45
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	46.99
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	46.95
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	44.66
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	44.25
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	42.50
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	40.99
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	40.99
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	40.24
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	39.52
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	36.75
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	36.74
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	36.67
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	36.09
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	35.97
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	35.94
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	34.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	33.57
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	27.08
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	26.94
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	21.82
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.87
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.41
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.24
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.02
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.