Gene detail

Detailed information of XP_074609458.1 in Acropora palmata

Genomic Location: NC_133894.1:7758665...7781263
NR annotation: XP_044183099.1, vesicle-fusing ATPase-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074609458.1

ATGGTTCAAGTGAAAGTATCCAAGTGTCCGTCAGATAAGCTGTCCTTGTCGAACTGTCTTATTGTCAATGAAAATGATTTTAACCCAGAAAGAGTAAAATATGTCGAAGTTCGTACCAATGCTCCCCGAGGTTTTGTTTTTACCATTAAGGTTTCTGAAGATATCGCTCCAGGATCAGTTGGATTCAGTCTTGTCCAGAGGAAGTGGGCCAGTGTGCAACTCAACAGTTTGGTTGACATGGTTCCTTACAGATTTAGTGAAGGATCATTCCTGTCAAATATTACTGTTGAAGCAGACTTTCTTCAAAAAGCCAAGGCTAACAGTGAGGCTTATGACACAAACAAAATGGCTGAAGAGTTTACACATCAATTTTTGGACCAAGCTTTTTCTGTAGGACAACAGGCTGTGTTTGCTTTTCAAGACAAGAAGTATGTCATATTATGTGTAAAGAGTATGGAAGTGATTGATGTCAGTCTTCTGGGGGGTTCAGATGCAAAGGCTTCACAAGGAACAAATGTTTCCATTGGTGTTGTGACAAGAAACACTCAAGTCCTGTTTGAAAGAGCCGAGGGGTCAGTGTTAAACCTCACTGGTACTGCTAAGGGCAAAGCCGCCACCCAGTCTATCATCAGCCGCGACTGGGACTTCACTAAGCTTGGAATTGGAGGGCTTGATAAGGAATTCTCAAATATTATAAGAAGAGCCTTTGCAACAAGGCTGTTTCCTCCTGAGGTTGTTGATAAACTGGGATTGAGGCATGTGAAAGGAATTCTGCTGCATGGACCACCAGGAACTGGCAAGACTCTTATGGCACGACAAATTGGAAAGATGTTAAACACAAGAGAGCCAAAGATAATCAGTGGACCAGAGGTGCTTAATAAATATGTGGGAGAGTCAGAAGCAAACATAAGAAAGCTTTTCGCGGAAGCAGAAGAGGAACAGAAGAAGTTCGGAGACAACAGTGGTTTACATCTGATTATCTTTGACGAGTTCGACGCTGTCTGTAAATCAAGATACATGTACAATTCCGGCGGCACTGGTGTACAAGATTCAGTGGTCAATCAGCTTCTTGCAAAGATTGATGGTGTGGAGCAGCTCAACAACGTTCTACTCATTGGAATGACCAACAGGAGAGACCTCATTGACGATGCTTTGCTTAGACCAGGACGCCTCGAAGTGCAGGTTGAAATTGGCTTACCTGATGAGAATGGAAGAGTTCAAATCCTAGAGATACATACAGCTAAGATGAAGGAACACAAACTTCTTGCACCCGATGTGGACCTACCTGATTTAGCTGCACAAACCAAAAACTTCACTGGTGCTGAGATTGAAGGACTGGTGCGAGCGGCCCAGTCTACCGCAATGAACCGTTTTATTCAGCTGAAAACCAATTTTGAGATTGACCCTGAAGCTGCTGAAAAGATTGTCATCAGACAAGAGGATTTTTACCATGCTTTAGAATATGATATCAAACCGGCATTTGGACCTGCAGATGACAATCTTGACGTTTATGTGGCTAATGGTATCGTTCCTTGGAGCAACCAGGTGCAACGTATACTAGATGACGGCCGTCTGCTGTTTGACCAAACAAGAACTCAGGACATCACTGCGCCAATTACAGTTTTGCTTGAAGGTCCCGTTGGATGTGGTAAAACCGCCCTTGCAGTTCAGATGGCTCTTAATTCGGATTTTCCCTTCGTCAAAATGTGTTCACCAGAAAATATGATTGGCTTCATTGAAAGTGCCAAATGTCAAACAATTAAAAAGATATTTGATGATGCTGACAAGTCTGAACTCAGCTGTATCATTGTTGATGACATAGAGCGTCTTTTAGATTATGTTGCCATTGGCCCAAGATTTTCCAACACCGTTTTACAGGCTTTACTTGTGCTGCTTAAAAAAAAGCTGAGAAAAGGTCGTAAGTTGACCGTCATTGGAACAACCACTTGTCGAGATGTACTGGAAACTATGGGGATTGTCGAAGCATTTAACACAGTCATACACGTGTCCAGTTTGTCATCCATTGATCATCTGAAAGCAGTTTTTCAGGAAGTCAAGTTGTTCGATGCCGATGAAATCAAACAGGTTGAGAGAAACATTGGTCAACAGAGGTTGTTTGTGGGCATAAAAAAATTACTCGTGATGGCAGAAATGGCTGTTCAGACCAACAAGCGGGACCGAGTGGACAAGTTCTTGAGTCTTCTGGAAGATGAAAAATGTCTTAGAACTGGCCCGGTAATGAGTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P18708	Vesicle-fusing ATPase OS=Cricetulus griseus OX=10029 GN=NSF PE=1 SV=1
P46460	Vesicle-fusing ATPase OS=Mus musculus OX=10090 GN=Nsf PE=1 SV=2
P46459	Vesicle-fusing ATPase OS=Homo sapiens OX=9606 GN=NSF PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003119 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02933 all species →	CDC48_2	Cell division protein 48 (CDC48), domain 2	Domain	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF17862 all species →	AAA_lid_3	AAA+ lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR004201 all species →	Domain	CDC48, domain 2	Interproscan
IPR003338 all species →	Domain	CDC48, N-terminal subdomain	Interproscan
IPR003960 all species →	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR039812 all species →	Family	Vesicle-fusing ATPase	Interproscan
IPR041569 all species →	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR029067 all species →	Homologous_superfamily	CDC48 domain 2-like superfamily	Interproscan
IPR009010 all species →	Homologous_superfamily	Aspartate decarboxylase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23078 all species →	VESICULAR-FUSION PROTEIN NSF	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005795 all species →	Cellular Component	Golgi stack	Interproscan
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0035494 all species →	Biological Process	SNARE complex disassembly	Interproscan
GO:0043001 all species →	Biological Process	Golgi to plasma membrane protein transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06027	NSF, SEC18; vesicle-fusing ATPase	EC:3.6.4.6	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074609458.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

75TPM > 0

2Conditions

108.5Max TPM

55.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	41	52.90	108.53
all_coral_tissue · baseline	38	34	57.46	93.20

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	108.53
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	99.86
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	95.45
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	92.89
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	90.35
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	85.78
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	84.89
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	83.73
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	80.71
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	80.71
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	80.20
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	75.93
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	74.68
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	71.48
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	68.15
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	62.87
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	62.75
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	57.77
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	57.32
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	53.12
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	50.72
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	50.02
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	49.33
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	47.43
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	46.59
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	45.75
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	44.74
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	43.87
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	43.73
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	42.94
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	42.12
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	41.82
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	41.63
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	40.67
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	40.64
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	38.15
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	37.28
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	36.90
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	35.44
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	30.01
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.38
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	93.20
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	92.83
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	92.23
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	91.02
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	88.39
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	87.02
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	85.86
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	85.14
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	84.96
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	82.06
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	81.27
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	80.59
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	79.94
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	78.83
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	59.86
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	58.55
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	57.56
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	56.47
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	55.06
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	54.80
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	53.43
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	51.80
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	51.40
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	51.39
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	48.41
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	48.35
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	46.23
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	44.88
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	44.12
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	43.73
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	42.32
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	40.00
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	38.78
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	33.11
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.