Gene detail

Detailed information of XP_074609459.1 in Acropora palmata

Genomic Location: NC_133894.1:3533732...3542197
NR annotation: XP_044182385.1, threonine synthase-like 1 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074609459.1

ATGTTTCTTCTTCGACTTCCCAAACTCAATTTTCGCCACCCGTGTTTATCTGTAGTCCGCGCAAATTCTCGCGCGATTTTTATTGCCGCACACTTCTCCCATGGAAAATGTAAACAACAACCGCGTTTTCTTACAAGTAACTTCAAGTCGACGGCTCTCAGGAGCTACTCAAGTAATGCAGCAAGATTTCAAGATGATCGAAAGAAAGGTAACAACATTATTCTCATGGGAAGTCCTGGAGCAGGAAAAACAACTGTTGGAAGGATTCTTGGCCATCATCTTGGCAGAGAAGTCATCGATGTTGATGATGATGTCTTGGAGAAAGTGTGGGGAATTTCAGTGGCAGAAAAGTTATCCGAAGTTGGATCCCATGGCTTTGTTGATGCGGAGGGTCAGGCAGTCATGCAATTTTCCGCCAGCGACTCGGTCATTTCTCTGAGTGGCTCCAATCCGATGCACAGAGAAGCCATGAATTACATTAAATCCCTTGGTGATGTCATCTACTTAGATGTCGCAGATGATGACATCTTAAATCGTCTGGCTGCGATGAAAGTGAATAGAATTGTTGGACAAAATGAAGGAATCAGTATGAGTGAAATTCTCCAGTATCGGAAGCAATTTTACGAATCCAGCTACGACGTGCGCGTTTCATGTGCGCGAGGTGATTCGGCCGAAGAAATTGCTAACAAAACTTTGAAAACACTGAAGGAGACACAGGACGAGATAGGGTTCATCAGCACGAGAGAAGAACGCGCGGAAACAGATGAAAGACCAGGATTTTTAGATGTTGTTTTAGAAGGTCTGGCCCCTGATGGAGGACTTTTTGTACCGAGGAGACAATTGCCATTCTTTACTGAAGGTCAGTGGGAAAGGTTTGTGGATTGCAGTTACCAGGAACGAGCGCTGCGTATCTTAGAGGCCTGGGTGTCACCAAGCGATCTCCACCCCTCCTCCCTGCGGACAATGATCGACTTAGCCTACTCCACTAATTTTCAGCACGAAGCCATTGCGCCTGTCATCAAGCTCAATGACCAGTTCTTCATTCAGGAACTTTTCCACGGCCCCACAGCTTCGTTCAAAGATCTTGCTTTGCAGTTAACGCCACAGTTTTTCAGCGAAGGGGTTTCCAGAAAGGCAACCAGCGGTGAACAAGTAAAATATCTGATACTTGTTGCTACTTCAGGTGATACAGGAAGTGCAGTGCTAGAGGGGTTTAAAGGGAGCTCCAACATTAAAGTTCTAGTCCTTTATCCGCAAAAAGGAATTAGCACGGTACAGAAATCCCAGATGACAGCTGCGGATGGGAGAAACACGTGCGTTATTGGTGTAGAGAGTGACTTTGACTTTTGTCAGTCTTCGATAAAGACAATCTTTAACGATTTGCCTTTTAGCAAGAAACTTATGGACTCCCACAACGTGAAACTAAGCGCTGCTAACTTGTTGAACTGGGGAAGGCTTTTGCCCCAAGTTGTTTATCATGCTTCGGCTTACTTGGATCTTGTAAAATCAGGGGTTATCTCGATGGGTGAAGCTGCAGATCTTTGTGTACCTACTGGGAACTTCGGAAATATTCTGGGAGCTTATTATGCCAAGGCCATGGGCATACCGCTGAACAATCTGATCTGCGCTTCAAACGAGAATAATATTCTGACGGAGTTTTTTCGCGCCGGGTCTTACAATATGGCTTCGCGCCGATTAAAACAGACCATTTCCCCGTCAATTGATATACTCAAGTCCTCGAATTTGGAAAGGCTACTTTACCACGCAACAGAGAACAACGGAGCAGCAGTAGCGCATTGGATGGCGTCTTTAGAAGAAGACAAGTATTTTAAGGTTTCGGATGACATTCGCAAGGAGCTGTCTACCATATTCAAAGCTGACTGTACGACAGATGACAAGTATCTCAAAACGCTGAAATCCACACACGAGCAAACGGGTTACATCTTGGATACCCATACAGCAGTTGCTATGGATATAGCGAGTCGGTTTGCGCATGCCAGCATGCCAATGATTGTTTCAGCGACTGCGCATTACAGCAAGTTTGCTTATGATGTGCTGAGGGGACTGGGAGAATTCCCATCGTGCCACGAGCCTCGAAGTTTGTTTTTCAGCTTGAAGAAACTCGACGCTCGGCCTGCAATGCATGCAAACCGAGAAGCGGTTGTCAGTCGTCCGCAAATACACAAAGGCCAATGTGAAGCTAATGTTAATGCTGTTATGAACCAGGTTGAAAGTTTCGTAGAGAAGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IYQ7	Threonine synthase-like 1 OS=Homo sapiens OX=9606 GN=THNSL1 PE=1 SV=2
Q9BH05	Threonine synthase-like 1 OS=Macaca fascicularis OX=9541 GN=THNSL1 PE=2 SV=1
Q5R5P3	Threonine synthase-like 1 OS=Pongo abelii OX=9601 GN=THNSL1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006549 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01202 all species →	SKI	Shikimate kinase	Domain	Interproscan
PF14821 all species →	Thr_synth_N	Threonine synthase N terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000634 all species →	Binding_site	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	Interproscan
IPR037158 all species →	Homologous_superfamily	Threonine synthase, N-terminal domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036052 all species →	Homologous_superfamily	Tryptophan synthase beta chain-like, PALP domain superfamily	Interproscan
IPR031322 all species →	Family	Shikimate kinase/gluconokinase	Interproscan
IPR029144 all species →	Domain	Threonine synthase, N-terminal	Interproscan
IPR004450 all species →	Family	Threonine synthase-like	Interproscan
IPR000623 all species →	Family	Shikimate kinase/Threonine synthase-like 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43515 all species →	THREONINE SYNTHASE-LIKE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006520 all species →	Biological Process	amino acid metabolic process	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074609459.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074609459.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

53TPM > 0

2Conditions

12.0Max TPM

3.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	29	3.75	12.02
all_coral_tissue · baseline	38	24	3.41	9.88

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.02
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.92
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.16
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.01
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.82
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.51
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.25
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.40
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.22
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.94
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.76
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.66
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.15
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.93
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.71
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.39
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.02
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.91
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.51
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.46
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.38
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.87
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.53
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.26
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.59
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.13
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.92
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.58
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.58
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.88
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.66
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.93
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.40
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.23
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.76
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.81
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.75
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.31
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.31
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.27
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.11
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.87
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.70
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.54
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.92
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.75
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.58
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.17
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.99
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.85
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.51
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.20
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.15
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.