Detailed information of XP_074609752.1 in Acropora palmata

Genomic Location: NC_133894.1:19080656...19094705
NR annotation: XP_029201612.2, LOW QUALITY PROTEIN: uncharacterized protein LOC114966049 [Acropora millepora]
Species abbreviation APALM · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9LQV2RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1
Q0DXS3Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2
Q8LHH9Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHL2 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000941 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00270
all species →
DEADDEAD/DEAH box helicaseDomainInterproscan
PF05183
all species →
RdRPRNA dependent RNA polymeraseFamilyInterproscan
PF00271
all species →
Helicase_CHelicase conserved C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR014001
all species →
DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR011545
all species →
DomainDEAD/DEAH box helicase domainInterproscan
IPR043519
all species →
Homologous_superfamilyNucleotidyltransferase superfamilyInterproscan
IPR001650
all species →
DomainHelicase, C-terminal domain-likeInterproscan
IPR007855
all species →
FamilyRNA-dependent RNA polymerase, eukaryotic-typeInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23079
all species →
RNA-DEPENDENT RNA POLYMERASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003676
all species →
Molecular Functionnucleic acid bindingInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0003968
all species →
Molecular FunctionRNA-dependent RNA polymerase activityInterproscan
GO:0030422
all species →
Biological ProcesssiRNA processingInterproscan
GO:0031380
all species →
Cellular Componentnuclear RNA-directed RNA polymerase complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for XP_074609752.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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