Gene detail

Detailed information of XP_074609906.1 in Acropora palmata

Genomic Location: NC_133883.1:3527480...3541352
NR annotation: XP_044173087.1, NACHT domain- and WD repeat-containing protein 1-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074609906.1

ATGAGAGGAAATCACAACTCTGCAAACATTAGCAGGTATAACAGGTCCGAAAATTCTCAAAATAGAGTTCACAATGGCACAGCATTAACTCCGGGATCTGCGTTATTTGATGAGCCTCCAATCCTGGGATCCAGGCTTTCCTCGGCTGCCACCCAAAGCGCTTTTCACGAGTTTCCCGAGCTCGTGGCGCAACACAGAAGAGTCATGCGCGGAGATCTAGAACAACTCTTAAACGCGAAAGCAAAGATCATCCGCGTATTCACAAGCTCTACTTTTACGGATATGGCTGCAGAAAGAAACGCGCTGATGGAAAGAACTTATCCACGATTGAAGGCTTTTGCGCAGCAAAAAGGCTATGAGTTTCAGGTGGTTGACATGAGATGGGGTGTACGAGACGAATCTGCTGACGATCACTCAACTCTAGAACTGTGTTTAAAGGAAATAAGAGCTTGTCAAGAACTATCAACCGGTCCGAACTTTATGGCCCTCGTGGGTCAGAAATATGGATTTCGTCCGCTTCCTTCCAAAATAGCCACCACTGAATTTGAACAGCTTCTTGACAATTTGACAGACCACGAAGAAAGAAATCTGCTGGAAAAATGGTTTGTATGTGACAAGAACGCGGTACCTTCCATTCATGTGCTCCAACCTGTCAGCTCTCAAATTCCAGGTTATCTTAGTCAGGATCCTGGGCAAAGACAGCATGCGAGTAAACAGTGGAATAAAATCTTTGCACAGTTACAGAAAATTGTCAGGCGAGGAGCTAAGAGATTGTTTGGCGATCAAGACGGAGAAAATCTTCGCAAGTACTTCTTTTCTGTTACAGAAAGTGAAATCCGCCACGGAATTATAAGTGAGACAAGCCCAGAGGAACACTGTCTGTGGATCAGCAGGAATCTCCGTGGTCTTGAGGATCATTTACAAGATAACAATGCGCAGTCATTCATAGACATTGACAGCAGTAGTCGTGACATCGACTTTGAAGCACAAGACCTTTTGAGGAAACTTAAAGAAGACGTAGTCAAGAAGACTCTGCCAAGACCCAACATCAGGATATTTGACACCGAATGGAACTCCAAAGGGATTTCTCCGAGTGCTATTCCTGAACACGCTGAATATATCAATAACTTATGCAAGGAAGTGGAATACTTGCTAAAGGATAAGATCACAGATTTCATACACAGAAAAGTTAAAGACGAAGTCAGTGATCCACAGTATGATGAAGTTGTCGAACATTTGCGATTCTGTCAAAACAAATGCAGCACGTTTCATGGACGGAAGGAAATCCTTGACCAATGCAGGGCGTATCTTAAGGATGACAGACAGAATCCTCTGGTAATTTATGGCCAATCAGGCTGTGGGAAGACATCAGTGATGTCCATGATTGCAAAAGAGGCATGGAATATCTCCAGTCAGTCTAACGTAGTCATTCGCTATATTGGAACCACTCCGAATTCTTCACAAATTCGTCTTCTGTTGCGCAGTGTCTGTGAACAAATTTGCAACATCTATGGACAAAATCCCCACACCATAAGAAAGGAAATCAAAGAGCTTCACGAAGATTTTATGAGTTGCCTTCAGCTAGCAAAAGAGGAGGAACCACTATTCATATTCTTTGATTCACTGGATCAGTTTGGTCCAGAGGATAACGCCAGGCAGCTCATATGGTTTCCTTCAGTTCTTCCAAACCATGTTAAGCTTGTAGTCTCCACTTTGCCTGACAATGAATACGAGTGCTTCCCAATTCTACAGTCATTACTTTCCAAACACAACTTCGTGGAAGTTCCCAAATTGCCCGAAAAGGATGCTTTTCATATTTTAAAAACCTGGTTGAGCGTTGCTGGGAGAACTCTTTCTCCATCGCAGGAATCCGTCGTCTCAGAAACACTTCAGAAGTGCTCTTTGCCGATCTTTGTCCGAGTTGCATTTGACGAGGCATTGAGATGGAAGTCTTACTCTTTGCCGTGTGAAACTGTGCTGCAAAGCACAGTTAGAGGGGCAGTAAACGCTCTCTTTGAGAGAGTTGAGATGCAGCACGGGCGATTGTTGGTGCAGCATATTCTTGCTTACATAACAGCTTCTAAGAGCGGGCTGACCGCCACCGAAATAGAAGACTTGCTGTCGTGTGACGATGAAGTGTTAGAGGATGTTTACCAGTATTGGACACCACCAATAAGGCGAATTCCTCCATTGCTGGGGGTTCGTATAAGGAACGACTTAGCTGGTTACTTAATTGACAGGGGAGCCGACGGTGCAAGCGTCACCACGTGGTATCACAGACAGTTCATTGAAGCTGCGAGAGATCGATATTTGTCGACGGAGGAAGAGAGAATTCGTACCCATCGAGCTTTGAGCGATTACTTCTTAGGTGTGTGGGCAAATGGAAGGAAAAAGCCCTACAATAACAACAAAGGAGAGAACTTACAAGCCGATCGTTTTGTTGCCAATCAGCCTTGGACATTTGATAGCAACAAAAAGCTGAAGAACTTCAATTACCGCAAGATAAGTGAACTGCCATATAATTTGGTGTTGTGCAATGAAACAGACACGCTGAAGAGAGAAGTTTTGTGCAACTTTTCGTTTCTCCTTACGTGTCTGGAAGCCTTCTCCTTAAGGGATCTCATGGATGATTTTGACTTTGCTCTTCAAAAAATTGGCGACACAGACATCCAACTTGTTAAAGAAACTCTTCAGCTTTCAACGTTTGCTCTTCTTCATCATCCTGCCCAGCTATCGTCCCAGCTCCTTGGAAGAATCCAAGCCACTGAATCCGAGTGCATCAATTCGTTGCTTCAGCAGGTTCAAAATTCGCGGCGACCTGCCTTGTTACCCAGTACTGTGTGTTTGACCTCACCGGGTGGGCCTTTGATACACTCCATGTCTGGGCATCAGTTGCCTATCACTGCCCTTAGTTCCAGTGCAGATGGAAAGCTGCTTGCAAGTGCATCTGTTGACTCGACATGCTCAGTATGGGACGTCAATTCGGGACGATTAGTGAGAACCTTTGAAGGGATTGGTGAAGACGTCTGTTATGTTGCCATATCTCTGGACAACTCTTTGGTGGTTACCTCGGCAATCAGTTCCTTTTCAGCGTGGAGACTTTCAAACGGTCAGCGTATGTTTTCCGTGTCACAAGATCATGCGATTTATGCTGCACCAATATGTCTGCTAGAAAAAGAGAAGAAAATTCTCATGGCAGCATTTATCAAGTCATCCATCAAGCTATATGATTTGCAGGCTGGAAGCCTTGCCTTGGAGATTGATGACAACTCAGAATCAGATGATATCTCTTCTTCGTTGTGCCTTTGTCCTATGGAAGATCAAAGTGTCTTGTATGCAAGCACAAGCAATCTGGCTACAACAACAACCTGGGTACGACAAGCGAATTTGCACACGTATGACGTTTTGGATATTGCACAAATCAGTTCGAATCAAACCGTGCACTTTATTGGGGTCACAAAGATGAACCAGATGCTTTTAGCTCTCAGTGAAGGTTCTCCCAACACGAGAAAAGAGTCCTCCGTACAGACATTTTTCACTCTTGAACTCTGGGATTTAAAAAGAAAGATTCTGGTCCATCAATTGGTCGAGCCGTCAAGCAAAGTGCGATGCTTTGCCGTGTCGATGGACAAATCTAAAGCACTGACTTTAGGTAACTCAAGGTTTTTGGCAAGTGCTAATGTTTTTCATGCCGAAATAAAGATTTTTGATTTGGTTTCTGGAGAGCTAATCCAACGGATGCTTAAATACCCGAGTAGCATTCATTTGGTACAATTTATTGACTCCAGCCATGTTATAACTGCATCGCGAGACAAAATTATCAGACTTTGGGATCTTGAGAGATCGGCTCCTCCATCTGCAGTTGAAGAGCTAAAGGAGGAGCAAACTGAGGTGGAGATTGTGGATATGTACGGACATCGTGCAATTTGTTGGGAGAAACATGCATTACGAGTGGTAGATCTTCAAGCGGGTCATTTCATACACTTTGTTAATGGTCTTAAACCTCAAATTGTATTTGTTGATGACAACAAAGCCATTCTTGTGTCGTGTGGGAAGATGTCTCTATTTGACTTAAACAAGAACCAAATGATTGTCCAATTTGAAGGTGGCATCTGGGACGAAGGACTTGCAAATGGTTGTTTTATCCACACGATGCACGAAGTAGTTGCGGTAAATTCAGACCAAAAGTCTCTGTGTGTCTATGACATGCACAGTGGCCAGAGAATATCCCAGATGAAATGTGAGCACATTCGAAGATTTGTGCACACTCCAAATGGAGACATCTGTGTTTTGGGGCACAGTATGATAAACGACGAAGAACCTGCTAAATCTCGGTATTTCCTTTCTGTTTGGAACATAAAACAGAGAAAGAGAGTTCGAAACATTGACCAAGAGAATGTAGAAACGGATTTTAATGAAATGAAGTTGGTCAAAGATGGAAGCCTTTTGTCCGACATTGTTTACGATTTGCAATCTAAAGTTTACCGAGCTGTTGTATTTGATGTGGAGACTGGAAAGCTTTTGTTTGAGTCAGCAACGAATTATCAAGTTCATACATCGGTCATTCTTCCAGAAGCTAGACATCTGCTGCTAGGATTATTTGATGGAGCAATACAACTCGATGACATCGACACTGGAAAATGCCTCCATAGAATTAAACCAGCGCATCTTGGGTCAGTCCATCGCATCTCTACAACCGACGATGGCACAGTTGCTATGACAACAGCAGGAGGTTTGGACTCTAAGGATCGTTCGATTCGATTTTGGAACCTTGACAAAGATCGAATGGAACTGTTGACTGTGTTCACCCCTGATGCCAAAGTTTCGTCCATGAACATCTCGAGTGACGGCTTCTTTGTCGCTTTGGAGCTGACGGATGTTGTCCCCTTCGTTCTTTTAAGAGAAAGCGGAGGCAACAGGAATTCGAAGCTGCAGTTGAGGACTTTCGACAAATTTACTTGCTATTCTGTTGTAGATTTGTCTAGCTTCAAGATTCTCAAGTCGGTCAGCCAGGGTGGATTTGAGTTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q149M9	NACHT domain- and WD repeat-containing protein 1 OS=Homo sapiens OX=9606 GN=NWD1 PE=1 SV=3
Q9ULI1	NACHT and WD repeat domain-containing protein 2 OS=Homo sapiens OX=9606 GN=NWD2 PE=1 SV=3
A6H603	NACHT domain- and WD repeat-containing protein 1 OS=Mus musculus OX=10090 GN=Nwd1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000345 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF05729 all species →	NACHT	NACHT domain	Domain	Interproscan
PF13271 all species →	DUF4062	Domain of unknown function (DUF4062)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR052752 all species →	Family	NACHT and WD repeat domain-containing protein	Interproscan
IPR007111 all species →	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR025139 all species →	Domain	Domain of unknown function DUF4062	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19871 all species →	BETA TRANSDUCIN-RELATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074609906.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074609906.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

82TPM > 0

2Conditions

11.9Max TPM

5.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	45	5.15	11.92
all_coral_tissue · baseline	38	37	5.63	11.20

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.92
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.11
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.92
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.48
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.32
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.55
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.40
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.20
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.51
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.37
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.33
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.30
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.26
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.13
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.11
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.99
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.42
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.00
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.41
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.19
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.79
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.42
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.02
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.98
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.65
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.64
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.47
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.40
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.35
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.25
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.14
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.78
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.75
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.67
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.45
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.30
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.23
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.22
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.19
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.14
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.11
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.41
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.37
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.21
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.97
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.20
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.15
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.09
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.42
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.96
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.58
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.56
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.40
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.09
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.05
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.75
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.53
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.37
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.35
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.22
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.81
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.63
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.59
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.52
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.24
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.06
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.99
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.14
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.55
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.51
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.30
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.94
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.89
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.75
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.53
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.22
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.99
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.86
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.81
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.61
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.32
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.08
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.