Gene detail

Detailed information of XP_074609907.1 in Acropora palmata

Genomic Location: NC_133894.1:18499153...18520546
NR annotation: XP_029197017.2, calcium-dependent secretion activator 1-like isoform X1 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074609907.1

ATGCTTGCATCTTCATCTGACGAAGAGGACAGTGAGGATGTCGTCGACGGAGACGAACACAAGCAGGAACTGCTTAACATTTTTAAGCGTGGAGAACAGCATCCGTCCAATATTTCTGGGCCAAGCGCTTCAAGAAATGTTTCGCCTTCGCTTCATTCTCCAAGTCCTACGCTTTCTGTGGTTTCAGAAGCTACATTACAAGAGCAACAAGAAGACGACGAAAGACGCGAAAGATTACAGATGTATGTGTTTGTTTTACGGTGTATATCGTATCCCTTTAATGCCCGACAACCTACAGACCTAGCACGGAGACATGCTCGCGTGAGTAAACAAGATTTGGACAAAATCAAACATCGATTTGAAGATTTTCTTCGTGGAGACACAAAGATAGCGTCAGATGAGGCATTTTTTAACGCAGTACGAGCTTATTATGATATCTTCATCTGCAGCGAACGTGTGAAAAAGATGGTTATAAGCGGTGGTTGTTCTTCTAATGACTTCCGGGAGGTATTCAAAGCAATGATTGAAAAGCGAGTCCGAAGTTTACCAGAGATAAATGGAATAAGCAAGGAAACTGTTCTAAGCTCCTGGATGGCAAAAAATGATGCTATATTTCGTGGGGAAGACGATCCGAAAAAGGGCCCAAGAATTGCAGCTTCGGCAGCTTCGGAATTAATTTTATCAAAGGAACAGCTGTACGAAATGTTTCAGACAATTCTTGGAGTTAAAAAATACGAACATCAAATTTTGTTTAATGCTTGTCAGCTTGATAGTGCAGATGAACAAGCAGCTTGTATCAGAAGAGAACTGGATGGGCGACTCAAAGCTATAGTTGATCAGAGAAAGCACCTGACCAGTTTTGTTCACAAGGATATGGAAAGTCTGTTTGTTGAAGAACAACAGGCAGCAATCACCCAGCTTCGTGCAAATTTGGAAAGTCAGCCAGTTACTAAAGGATCATCAGACTCTAAACTGTATTCATTTAACAGAATCAAGGGTCCCCAGCATACAATCTCTATTACTGAAGTTACAGATGATGGGGATTCTGTTTTGTCCAAATCTGATGTCATGCTCAATTTCACCATTGAGGTGATTGTGGTCGAAGCAAAAGGACTTGACAAAGTTCTTCCATCCAAAAAGAAAGTATATTGCACCATGGAGGTGGAAGGTGGAGAAAAGTTTCAAACTGAGTCTGCACCTGCAGCTGAGAAGGCAAGTTGGGATTCGCAAGGTGATTTTACCACTTGCCATCCTCGTCCAATTGTAAAGGTCAAACTGTACGCTGAGAATACGGGACTGTTAGCGCTTGATGACAAAGAACTTGGAAAGGTGATCATTGAACCAATTCCCGGGGGGTCTGAGCAGCCTGAGTTGCATGATGTCATCCAACCCAACCCTGCCACTGGTAGCAAAATTAAACTCAAGGTTGCTGTAAAGATGGACAAACCAGTAAACCTAAAAAAATGTGGAAAAATGTATGCTCAAGGAAAGAGTGTGTGGAAGAAGTGGAAGGAACGCTTCTATGCGTTGGTGCAGGTAAGTCACTACACTTTCGCGATTTGCAGCTACCGTAAGAAGCAAGCTGAACCAACTGAGATGATGGAACTTGATGGTTACACTGTTGACTACTGCGAAGCAATCAATGATGAAGAGCACAAAGGTGGAAGGTTTTTCTTCAAAGCTGTGAAGGAAGGCGATCAGGTCATTTTTGCTACAGAAGAGGAACTTGAGCGACAGATGTGGGTCAACAAATTGTACACTGCCACAGGACAGTCTCACAAACCCGTGGTACCAAACCTTTCTGCTGTCAGTGTTCAAGCTCATGTCAGTACACTAACAAGACTGCAAGGAGATCGTGATCGAGCTAGAAAACATGGACTTGAGGATCTCATTCAAGCAGATCCCAGTACATTTAATCATCATGTATTGTTTGAGAAGCTTCTGCACCTGACACTAACCCACAGATTGAGTGACTCATACTCGTGTTTGGGCTGGTTCTCTCCTGGCCAAGTGTTTGTTTTGGACGAATACTGTGCTCGCTATGGAGTCCGTGGCTGTCAGCGGCATCTCAGCTACCTCAGTGATTTGCTTGACAGAGCAGAAGCTGGTGTGATGATTGACCCTACTCTGCTTCATTACAGCTTTGCTTTCTGTGCATCACATGTCCATGGAAACAGGCCTGATGGTATTGGCACCATCACAGTCGATGAGAAAAATTGGTTTGAGGAGATAAAGATTCGTCTTTGGAACTTGCTGTCGTATCAGATTACTCACTACAGGTATTCATTTCCCTTTGGACGACCAGAAGGAGCACTTAAAGCCACACTTTCATTATTTGAAAGGGTAATGATGAAAGATCTCTCTACTCAAGTCCCACCTGAAGAGTTTAGAAAGGAAGTAAGAGCTTGTCTTCACCAGGCTGCTCTTGTCAACTATACACGTGTTTCAGCTTATGCAGGCATTGAAGGTGCAGCAGCTTTCATAAAGGCCTTTTTTGTTTGCATGTATTTGAAGTATACTCAGTACTGCTTTCCATTTATTACTCCAGTAGGGGATAATGTCTCACCAGAAACCAAATTGAGCAAGCTTGTGCATTTAGCTGAGCTGTGTATTGATCTTCTTCACCAAAATGAAGAACACCATGCGGAGGCTCTGCTATGGGTGTCTGATCAGTTGGTTGAGCACCAAGAGATCTTTTGGTCTCTGTTCACTGTTGACTTGGATGCGATACTTGCTGTTCAGCCTCCAGACACTTGGGAGAGTTTCCAGTTGTATCAGCTACTAAATGACTATCTGTCAAATGATGGAAAGCTAAACCGAGGAAAGTTTCATTGCCATTTGAGAGACCTCTTTGCTCCACTTGTTATTCGCTACATTGATTTGATGGAATCTTCCATTGCACAGTCACTGCACAAAGGATTCCAGAAGGAGACCTGGGCTCCAGTCGAAGAGGGTTGCCGCGCATCTGAAGAGCTTTTCTGGAAGCTGACAGTGCTTCAGCAGTTCATAGCGGAACTAAACTGGCCTGATGAAGTACTAGCTTCTCACCTCATGAAAAGACTAAAGCTGATGGCCTCAGACATGGTGCAGTCCTGCGTCAAAAGAACAAAGGTCTCATTTGAAAAATGGCTCAAGAGTAACAAGTTTAGCGTAGATCTGGTGGTCTCCAGAACTGTTTGTGTTATGTTGAATGTTGTCATACAAGCTAAAAGACAGTCTCGGTTTCTTTGTGCAAGAGAAGAATCAGAAAATACAGAGTATTGCTATCATTCAGATGTCTACGTCTTTTTGAAAGAGGTCATTGCGGAGATGACTTCGTCCATTATCCTCAAGCTTAACGAAGTGATAGAGTCACTGTTATCCAAACTCGCTCGCTACGATCAAGGGTCCATTTTAGCACCGGTGCTTTCTCTCAGTAATCCTGGTACAGATCTCGAGGATAACTATTTACAGTTCTTCAAATTAAACCTCCAACAATTCCGATCTCATCTTAAGGACGACAAAATGAAGAAACAGCTGATTAAGGACTGGTATACGTCTGTTATTACTAAGATTTGTGACTGGCTGTCAGATCGAATGAGCATGGCGTTGCACCAGTTCCAAATCCAGGCTCTCCTAACCGTTGCAGCGGAGCTTCCTCAGTTTGTTGCGGAAGACCTGTTGCATGGGCGCATCTTCTGTCCATCCTATAGGACTGTGGTCTCGCGTCTGCGAGTCGAGGACGCGATGCAAAAGGGACAGAGCATTTACGACATAGAAGATCAACCATACCCTGTTGTAGACAAAGATGATGAGGAAGAAGACACTGAGTCAAGTGACGAAGAACCGTTCGTTAAATTGGAGACTGGGAACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GLR7	Calcium-dependent secretion activator 1 OS=Xenopus laevis OX=8355 GN=cadps PE=2 SV=1
Q62717	Calcium-dependent secretion activator 1 OS=Rattus norvegicus OX=10116 GN=Cadps PE=1 SV=1
Q86UW7	Calcium-dependent secretion activator 2 OS=Homo sapiens OX=9606 GN=CADPS2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003049 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF06292 all species →	MUN	MUN domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR010439 all species →	Domain	MUN domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR014770 all species →	Domain	Munc13 homology 1	Interproscan
IPR033227 all species →	Family	Calcium-dependent secretion activator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12166 all species →	CALCIUM-DEPENDENT SECRETION ACTIVATOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0016079 all species →	Biological Process	synaptic vesicle exocytosis	Interproscan
GO:1990504 all species →	Biological Process	dense core granule exocytosis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19933	CADPS; calcium-dependent secretion activator	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074609907.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

74TPM > 0

2Conditions

94.8Max TPM

40.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	41	38.89	94.76
all_coral_tissue · baseline	38	33	43.14	70.86

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	94.76
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	93.80
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	71.60
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	69.87
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	68.84
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	68.08
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	66.37
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	62.71
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	61.28
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	60.13
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	59.57
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	58.34
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	58.21
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	57.11
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	55.61
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	55.44
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	54.72
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	52.85
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	52.56
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	51.09
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	48.05
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	41.83
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	41.59
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	39.33
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	28.75
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	26.17
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	25.89
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	25.52
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.83
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	23.99
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	23.49
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.99
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.92
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.19
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.70
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.92
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.35
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.04
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.22
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.52
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.61
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	70.86
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	68.88
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	67.97
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	67.03
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	66.47
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	64.77
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	63.59
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	63.35
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	62.09
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	59.57
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	57.85
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	57.57
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	57.43
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	56.88
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	56.73
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	55.80
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	54.70
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	52.52
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	52.30
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	50.63
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	50.56
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	49.58
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	47.91
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	47.83
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	35.12
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	33.73
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	28.04
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	26.42
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	26.06
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	25.41
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	24.23
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	21.31
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.07
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.