Detailed information of XP_074609976.1 in Acropora palmata

Genomic Location: NC_133882.1:4145526...4165003
NR annotation: XP_044163862.1, uncharacterized protein LOC114959346 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A0A0R4IBK5E3 ubiquitin-protein ligase rnf213-alpha OS=Danio rerio OX=7955 GN=rnf213a PE=3 SV=1
A0A0R4I9Y1E3 ubiquitin-protein ligase rnf213-beta OS=Danio rerio OX=7955 GN=rnf213b PE=3 SV=1
E9Q555E3 ubiquitin-protein ligase RNF213 OS=Mus musculus OX=10090 GN=Rnf213 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001623 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07728
all species →
AAA_5AAA domain (dynein-related subfamily)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003593
all species →
DomainAAA+ ATPase domainInterproscan
IPR011704
all species →
DomainATPase, dynein-related, AAA domainInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR031248
all species →
FamilyE3 ubiquitin-protein ligase RNF213Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22605
all species →
UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016887
all species →
Molecular FunctionATP hydrolysis activityInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0004842
all species →
Molecular Functionubiquitin-protein transferase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K22754RNF213; E3 ubiquitin-protein ligase RNF213EC:2.3.2.27
Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074609976.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
71TPM > 0
2Conditions
38.2Max TPM
10.6Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 37 7.31 22.80
all_coral_tissue · baseline 38 34 14.57 38.16

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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