Gene detail

Detailed information of XP_074610036.1 in Acropora palmata

Genomic Location: NC_133894.1:9448401...9450565
NR annotation: XP_044171337.1, uncharacterized protein LOC122955651 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_074610036.1

ATGGATAAAGTCTTAAGGCCGAAACGTCTAGACACAGATCCAAACAGTGGGACAGCGGCAAAGGAATGGCTTCACTGGAGACGTACATTCGAAAACTTCATGGCCGTCTTGCCACAAGAAGGTTTGGATAAACTTGCAGTCCTTTCTAATTTTGTTTCGCCAAGCATTTTCCAACACATCGAAGATTGTACAGATTATGAAACATCAATTGAAACACTTCAGACACTGTTCATCAAACCGAAGAATGAGATCTTTGCACGCCATCTTTTAGCTACTCGTAAACAGGCTCCTACGGAAACATTAGACGAATATTTGCAAGCCCTGAAAACGCTAAGCAAAGATTGCAACTTCAAAAATGTCACGGCTGCACAATACTGTGAAGAGAGCATCAGAGATGCCTTTATTTCTGGGTTACAGTCAAGTCTGATACGCCAAAGACTTTTGGAAAACAAAACTCTTGACTTAAAAACTATGTTTGATCAGGCTAGATCTCTTGAGTCTGCAATGAAGAGTTCTGAGTCGTATGCAGTTCCAAATACACTTGTCAATGCTGCTGTTCCTGCTACGTCGGCAAAACCTGTTGATGGCCTAGAAGCGAATACTCTGGCTGCTGCGGTTACCGAAACCACTTCTCTCAGCTGCTATTTCTGTGGCAACAATAGACACCCACGTTCGAAGTGTCCTGCGAAGGATGCTACGTGTGCTAAATGCCAGAAAAAGGGTCACTACGCTAAAGTATGCCAAAGTAAAGCTGCCTCAAAGGTATCAGCTGCCATGCACTCTCCTATTATAGCCACCACTCAAAGTTCTGGGTCTCTATCGAAATCAACAGCGACAATCAACATTGGAAAATTGGAAGTTAAAGCTCTGTTTGACAGCGGCAGTACTGAGAGTTTCATACACCCAAATCTTGTCAGAAGGGCTGGTCTGACTGTGCGACCAGCCGGTGGTGCTGTTTCCATGGCTTCTACTGCCCTATCAGCCAATGTTACAGGGACTTGTACGACCAACCTTGAATACCAAAACCAGAAATACACCAACGTTCATCTTTCAGTCCTTCCAGGGCTCTGCGCTGACCTCATACTGGGCTTGGATTTCCAGTCACAGCACGAGAGCATCACTTTTCAGTATGGAGGCAGCCAACCCCCACTATCTGTCTGCGGCTTCAGTACCCTCAACATGGATCCCGCTGAGCCTTTTGCTAACCTAACTGAAAACTGTCACCCTATTGTAAGCAAATCCCGCCGCTACAGCAGGGATGATTTAAAGTTCATCGATGGAGAGGTGGAACGGCTACTCAAGGAGGGGATCATAGAACCAAGCAACTCCCCTTGGAGAGCACAGGTTGTTGTGACCAAGGATGATAGTCACAAAAAGAGGCTAGCCATCGACTACTCCCAAACTATCAATCGCTTCACACTACTCGATGCCTTCCCACTTCCAAAGATAAATGATTTAGTAAATGACATTGCACAATATCGGGTCTTCAGCACAATAGATCTACGGAGCGCCTACCATCAGGTCCCTCTCAAGGAAGAAGATAAGCAATACACCGCCTTCGAAGCACGTAACAATCTCTATCAGTTCACACGTCTCCCATTTGGTGTCACAAATGGGGTCGCTTGTTTTCAACGCGAGATGATGAAGTTCATTGAACAGAACAATCTCAATGCCGTCTTCCCTTACCTTGACAACATTACGATCTGCGGGAAAGACCAACAAGAACATGATGCAAACCTTGAGAAATTCCTTGCTGCAGCAACGAGAAAGAACATCTGTTACAACGATTCAAAAAGCGTCTTCTCAACTCGCAAACTTGCTATTCTTGGATATGTAATTGAGGAAGGCGTTATTCGCCCAGACCCAGAACGACTCCAACAAGTCCCTTACGCAACCTTCCTGTGCCTCGTGACTCCAAATCAGTCAACAGGTGCCTTGGGTTATTCTCCTACTACTCTCAGTGGATCCCAGAGTTTTCTAACCGCATCAAACCACTAA

Transcript

Protein

Uniprot

Uniprot term	Description
Q8I7P9	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P10401	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P10394	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13650	Asp_protease_2	Aspartyl protease	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan