Gene detail

Detailed information of XP_074610550.1 in Acropora palmata

Genomic Location: NC_133894.1:7665819...7689504
NR annotation: XP_044182355.1, RNA helicase Mov10l1-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074610550.1

ATGTTCGGGCTGTACTCAAAGCTATCAGAATTTGTATGGGGATGTGAGGAAACTGAGGATACAAATAGTCAAGCTTCAAAACGCAATTTACGTGAAAAGAAAACTGTCTCCAAAGGCATCACCGATGATGTTGGATGTTCGCGCTTCTCACAAAATCCGAAATTTAAGAAAGAAATGGTTGGCAAAGTGACTCGATTATATGATGGCGCGGGGCTAATTGACGACGAGGTCTACTTTACGTTTGATAAGGTTATAGGCGGAGAGAGACCGGAAGTTGGTACAGAAGTTCTTGCAGAGGCATTTCGTGAGTCGGAAATGGCGGGCTGGAGAGCTGTGAGAGTCCAGGTGATGTCAGAATGGAAGCTTGACGAAAATGAGAAGCCTGCCTCTGTTGAAACTTTGATTGGTTCAATAACAAACATAACACATGATTCTGGAGTGGTGGATAATGAAATTAGTTTTAAAATGTCGTGTGTGAGGCAGGGCTACGTGCCGTTTTCTGGAGACTGGGTCAAATTAGATGTGGATCGAGCAGCAGATGGGACAATAGAAGTCACTGGAGTGATGCCTCTGCGTGAAAAGAACTTCACAGGGGTGGTGACATATGTGTCTTGTGGGGTTGGTTACATTGATGGAGAAGTGTATTTTACTTGTGGGGTTTGTTCACGTGGGTATCGCCCTCGAAAAGGTGACACTATTAAGACAACAGCTATAGAGTCCAAGCAGGGAAAAGCTGTGTGGAGAGCTATTAAAGTTGAACCAATAAGAACCACTTCTTCAGTATTGAGTCCTTCACTGCGTACTCAGCAGTTCATGGGCGGTAAAATGGCTGAGCTTTTGAGCAACAAGGAAGGGATAGTGATAACTGATCAACTGGACATAGGAGAAGTCCACCTCGGAGAATCAAGAATGCTGATTATATGGATAAGCAACCAGAGTGAAAGAGGACAAATTTTTCAATCTTGCACAACAATGAGACAAGATGACCAATTTTCTGTTCAGCTCAGTTCTAATGATCATTGGACCCAGTTGGAAACAACAGAGAGACCTAAAGGAAATGAAACTGTTTCGGTGGAGGAAATGTTAGTTCAGGGATCTTTGTTAGCACCTGATATGGAAATCCCAGCCAATCAGGCCAAGCAAACTACTGTTATGTTCAATGCCAAAAATCTTGGTCGAGTAAATCACCTTTTGGTGTTTGCATTTAATGGATTTGAGATTGGACGATATATTACTGCTGATGTGCGCGACCCTCAGCAGGCAATTTTGAAACCATGCACTCCATATCAACGACCTTACAGTCAAACCAATCAAGCACAACAAAAAGTTGCAAACGGATTCAGTGGAGATGATGCCATTATACCAGGAGAAAAGACCCTCAGAAAGCGGAAGTTATTTCTCCCAGTGAAGCTAGGACAGTATAACATTCCGAGAGACATACGAAGATGTATTCTTGAAGGTCGAGATTTGGGAACTATTGTCCAAGCATTGAGAGAGCCCTTGTCCTTGAAGAATTATGCTGCCAGGTTCTCAACATTGCTTTATGCCGAAGAACTTCAAATGGAAATTGATATGAGACAGTTTGACATAGATTCGGTTAGTATGAATGTCTGTGGTGAATATCTGAGTCTTCAAATTCCCGGGTTAGCTGAAGGCAGGCCCTCACTGTTGCTTGGGGATAAAGTCATTGCATCGTTGACAGGAAGCTCATCAGATGCTCCTAAATACGAAGGCTTCATTCATGAGGTTCGTAAGGATGACATTTTGCTGAAGTTTAACGAGGAATTTCACAACCGGTTTGCCATGCAAGACTGTGACGTCATGTTTTGTTTTAACAGAACCACACTTCGACGAGCTCATCGAGCAGTGGAATTTGCCCTTTCATTAGGGGAACCAGTGCTTTTTCCACGAAAGCTATCACCCAAGTTACCCGTCTTCAATCTCACGACGAGTGATTTACCGACGACAGAGCAGTGCGTCGAGGAAGATTTTCTGTATAACTCATCTTTAAATGAGCGTCAAAGGGCAGCTGTGTGTCGCATCGTCAGTGGTCAGTGTCGACCATCGCCTTATCTGTTGTTCGGTCCACCTGGGACAGGCAAGACTATCACTGTGGTGGAGGCTATATTGCAGATTTTTCGAAAAATTCCTTCAGGCAGAGTGTTGGCTTGTGCCCCGTCAAACAGCGCTGCTGATTTGATTGCAGAGCGCCTTCATCGCAGTGGTTTCGTTCTGGAAGGCGACATGGTGCGATTAAATGCAATCCAGCGAGTACAAGATATCCCAGAATCCATCGCACGATACTGTACCGACACAGACCATCTGGACACGGCTGCGCACTACCGCATCATAATCAGTACCTGCAGCACAGCTGGTCAGCTGTATTCTCTGGGATTGCGAGCTGGTCATATAACGCATGTGTTCGTTGACGAGGCAGGCCAGGCTACTGAGCCTGAGTGTCTCGTGGCTGTTGGACTGGCAGCAGGGGATGATGGACAGGTCATACTAGCAGGTGATCCGTTTCAACTCGGCCCAGTCCTCCAGTCTCGCGTAGCCTCTTCTTTCGGATTGAACATCTCCTTACTGGAACGCTTAATCAACAGACCGCTGTACTACAGGAATGAGGCCAAGTTTTCTGATCATGGCTGTTATGATCCTTTGTTGGTTACTAAGCTAGTCAATAATTACCGCTCACATCCTGCTGTACTCAAGCTTCCGTCCGCGGTTTTTTACCACGATGAGTTGGTGCCGTGTGCAAATGAGTGTATGAGAGAAAGCTTATGTCACTGGGAAAAACTTCCAAAGAAAGGATTTCCGGTTGTTTTTCACGGGGTCCAGGGAGAGGATCTTCGGGAAGGGAACAGTCCCTCCTGGTTCAACCCCGTGGAAGCGGTGCAAGTTGTCAAATATCTTCAAGCTTTAAAATCTAGCGATAAACTGTCGATCAAACTGAGCGATGTTGGCATTATTACGCCGTACAGGAAACAGGTTGAAAAGACTCGTCTTTTGCTTGCCTCTGTGGGGTTAGATGAAGTCAAAGTAGGATCTGTTGAAGAGTTTCAAGGCCAAGAAAGACTGGTCATCATCATTTCAACAGTCCGTTCTAATGCCTCATTGGTTGGTTCTGACGTTCGTCACACCATTGGGTTTCTTAGCAACCCCAAGAGGTTTAACGTAGCAATTACTCGTGCCCAGGCATTGCTCATCGTTATTGGAAATCCACACGTCCTTTGTCAGGATCCATACTGGTGCTGTCTAGTCCAGTATTGCGTTGTGAATGACTCTTATATCGGATGCGATTTGCCCTCTTTGGATCAGCATTTTGTAAAGGAGGAATTCGATGCAGCATCTAATCTGCTCAGTAACATTCTATTAAAACACGAAATTAATAGAAATGGGGATTTTACCGAGGATAAAAGCAATTCAGTGTTACAAGACTTGAATCAATCTAGTAATTGTACACAGGCCATTTCTAACGAGTCCAATATGCTGAGCTGCAACGGTGAAGACATCTCTTTGGTATCGGAGCCGCAAGAACAAATTGAATCTTCCAGCTCCAACAACACGCAAACGAGTAACAAGGGTGGCACGTTGACAATGCGTAAGAAACCGTTTGCTGGACCTTCGGTTAGCTCACGGGCGAGTCCCACCCTAACAAAGGAACCTCAACAGCTTTGCGTTTCATCCGAGGTTCTGTCTGATTCTGACGATGAATTGGAGCAATTTGTGCTTCAACCGAAAGGAAGGCGTCAAAAAAATATCAAACTTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BXT6	RNA helicase Mov10l1 OS=Homo sapiens OX=9606 GN=MOV10L1 PE=1 SV=1
Q99MV5	RNA helicase Mov10l1 OS=Mus musculus OX=10090 GN=Mov10l1 PE=1 SV=1
P23249	Putative helicase MOV-10 OS=Mus musculus OX=10090 GN=Mov10 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000828 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13086 all species →	AAA_11	AAA domain	Domain	Interproscan
PF21634 all species →	MOV-10_beta-barrel	Helicase MOV-10, beta-barrel domain	Domain	Interproscan
PF21635 all species →	Mov-10_helical	Helicase MOV-10, helical domain	Domain	Interproscan
PF14444 all species →	S1-like	S1-like	Domain	Interproscan
PF13087 all species →	AAA_12	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041677 all species →	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR049080 all species →	Domain	Helicase MOV-10-like, beta-barrel domain	Interproscan
IPR047187 all species →	Domain	Upf1-like, C-terminal helicase domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR049079 all species →	Domain	Helicase MOV-10, helical domain	Interproscan
IPR025223 all species →	Domain	S1-like RNA binding domain	Interproscan
IPR041679 all species →	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR045055 all species →	Family	DNA2/NAM7-like helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10887 all species →	DNA2/NAM7 HELICASE FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0035194 all species →	Biological Process	regulatory ncRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0043186 all species →	Cellular Component	P granule	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13983	MOV10L1; RNA helicase MOV10L1	EC:5.6.2.5	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074610550.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

56TPM > 0

2Conditions

10.3Max TPM

4.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	32	3.86	10.09
all_coral_tissue · baseline	38	24	4.15	10.30

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.09
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.36
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.66
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.52
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.48
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.39
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.86
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.70
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.31
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.18
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.02
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.87
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.85
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.46
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.38
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.92
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.27
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.82
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.48
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.92
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.90
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.59
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.54
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.19
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.16
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.10
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.09
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.08
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.52
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.38
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.37
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.25
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.30
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.48
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.19
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.05
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.72
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.51
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.14
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.09
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.86
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.28
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.84
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.80
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.75
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.73
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.42
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.41
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.31
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.99
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.20
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.02
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.84
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.27
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.06
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.63
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.