Gene detail

Detailed information of XP_074610697.1 in Acropora palmata

Genomic Location: NC_133895.1:14689077...14723825
NR annotation: XP_029200158.2, AP-3 complex subunit delta-1-like [Acropora millepora]
Species abbreviation APALM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074610697.1

ATGTTCGAGAAAAATTTAACAGACCTCGTACGAGGAATCCGTAACAACAAAAGCAACGAGGCCAAGTATATTGCATCATGCCTGGATGAGATTAAACAGGAATTGAGACAAGAAAATGCTGTAGTCAAGGCCAATGCTGTTGCTAAGCTCACATATCTTCAAATGTTGGGTTATGACATCACATGGGCAGCTTTCAATATCATTGAGGTGATGAGCTCTTCAAAATTTACTTTCAAGAGAGTTGGATATTTGGCAGCATCACAGTCATTTCATGAAGAGTTGGACATATTAATGCTGACAACAAACATGATCAGAAAGGACCTGTGTAGCATGAACATGTATGATGCTGGGGTTTCATTGTCTGGATTTTCCTGTTTTGTGACACCAGACTTAGCCAGAGATTTGGCTAATGATGTCATGTCATTGCTTGTGTCAACAAAACCTTACATCAGAAAAAGGGCTGTTCTATTAATGTACAAAATATTCCTCAAGTTTCCTGAAGCTCTTAGACCAGCATTTCCAAGACTGAAAGAAAAACTTGAAGATTCTGAGCCTGGGGTTCAATCTGCAGCAGTAAATGTGATTTGTGAGTTGGCTCGCAAAAACCCAAAGAACTACCTCTCCTTAGCACCATTGTTTTTCAAACTAATGACAAACTCCACCAACAACTGGATGTTAATCAAAATTATCAAACTTTTTGGAGCTCTCTGTCCCCTTGAGCCTCGGTTAGGAAAGAAATTGTTGGAACCTTTGACAAATCTCATCCACAGTACTTCAGCCATGTCTCTTTTGTATGAATGTATAAACACAGTTGTGTCAGGGTTACCCCAGCATAATCCCTCTATTCAGCTATGTGTGAGCAAATTACGAATTTTGATTGAGGACTCAGACCAGAATTTAAAGTATCTTGGCCTTCTTGCTATGTCCAAGATCTTGGCTGTAAATCCAAAAGCTGTCCAGGCACACAAGGACATTGTTCTACAATGCTTAGACGACAAAGATGAGTCTATTAGACTCAGAGCACTGGATCTCATAGTTGGAATGGTTTCCAAAAGGAATATAATGGATATCATTAAGAAATTAATGATGCACATCGACAAGGCTGATAGCCAAAGTTATTGTGATGAGCTCATTTCCAAAATTATTAAGATCTGTAGCTTGAATGACTATCACTATGTCACAAATTTTGAATGGTATATTGATGTACTCATTCAGTTGACAAGAGTTGAAGGTACAAGACATGGGAAGCTGTTGGCTTCACAAATGATGGATGTTACTATCAGAGTAAAGGCTATACGACCTTATGCTGTTCAGTGTGTGTCATTGTTGCTGGACAATAGTGAGCTGATCTCAGGTCAAATGGAAAAGAACAGAGTTTGTGAAGTTCTTTATGCAGCTGCATGGATTTCAGGAGAATTTTCAGAGCATTTGCCAGATATCAGTGCCACATTGGATGCACTTCTACAACCAAAAGCAACCTCCCTACCTGGTCACATCCAGGCGGTTTATGTCCAGAACATTGTCAAGTTATATGCCAAATTATTAGCCAATCAAGAGGAGGAAGAAGATGCTGTCAGTCAGTCACTTGGAGAAATGCTTGTTGAGAAGTTATCTGTCTTTGTACAAAGTGCTGATCTGGAAGTTCAGGAAAGGGCTAGTTGTGTCCTGCAGCTCATCAAGTATGTTATCAAGTTACAAGGAAAAGGAGTCAATTGCATTGAAGAAGTATCCTCACTGTTTCGAGGTGAATTGAACCCAGTGGCTGCAAAGGCACAGAAGAAAGTCCAGGTGCCAGAGGGGCTTGACCTTGACAAATGGATCAATGATCCACCATCAGATAGCTCGGAGGAGGAAGAAGAGATGGAAACCATATTTGAAACAGCCAATGAACACATGGACCTGAAACAGAAATATGAATCAGAGGATGAAGAAGAAATGAAAAAGCGACGAGAGCAAAGAAAACTGGATCAGCTTAGTAATCCACATTATCTAAAAATGTCTTCAAAGGTGGACAACCAGGAAAAGAGAAAGGAACTTGCAGTTGATGAAATTCCAATGGCTAATATTGAATTACCAGTGTCACTCAAAGTGTCAAGAGGAGTGGCTCTGGATAAGAAATATGCCTCCAAGAAGACAAAGAAAAGGAGGAAAAAGGGTCGCAAAGGAAGCCAAGTTGAGGAGGACGAACCTGATCTTGGAATCTCATATGAAGTCCTCCCAGCGGGTGCTGGAGAATTACCTGAGGGAGCTAACGAGTCTGATAATGACATCAGACAAGAAGAGATCGCTGATGCTTCTGAAGATCCCCATAAACTGTTAGATATTGATCTGAGCAAACCATTGGAGGCACACGAAGCCCTTCCAGTTCGACAGCATCGGGTTGTCAATGAAAAACAACCATGTGATGAAAATGAAGAGGAAACCACTCCCAAGAAGCACAGAAAGGGTAAAAAACACAGACACAGGAAGGAGAGCGAAAGCAAAAAGAGTAAGCACAAGCATAAAACAGAAAAAGAGGCAAAAGGCAAGAAAACCAAACACAAGCATTCCAAGAGTGAAGAGCCTGCTGCTCAGCCGAGTCTCATGTTGAATGGTGAAATTGATCATCACGAATATCCCAATAACGAGGAAGAAGTGGAGACCCCCGTCAGTAACGGGATAACAGAACTAGAGGACTTCAAGCCCTCGCTGGACACTCCAGGCGATCCACAGGATGACATGGATTTCTGGCTTTCTCCAACCCCTGAAAAGATATCAGCACCAAAGTCTGCTGAAACGCCAAAGGAGTCACTACCTCACGATGTACCTGCTGAAAACTCTCTACCAACAAAGCTATCCGAGAAGAATGAAGGTAAAGAATCGAAACATAAGCACCGTAAGGATAAATCAGATAGGAAGGAGAGACATGAAAAAGAAAGGAAAAAGGAAAAGAGAAAGAGTAAGACAAGTGAAAAGTCGGACAACGTAGAGTCACCAGCTGCTGAACTGGAAAAACAGAATGAGCCGACAAGTCTGGAGTTCATGGAGGAAAAGAAACAGCCTGTTATCACAAGCTACAAAGTTCTTGCGGAAAGTAGCGCTCTTAAACTGATGTACGAGACAAGAGTGACAACTCGACATAGAAATCAAGTTGTGGTTTCAGTTATTTTTAGCAATTTGACTGACCGTCATATAAAGTCTATGGAATTTAACGTGTTAGATTCCCTCAATACTCAACTTATTAGACCGATTGGATATTCTTCTCGGGATAGCGTTCCAGTCCCGTTTCACCTTTTACCAGATTCCTCAAATGAAGGACAGTTTGCTTTCACTGTAGAAAATATTGTTATGTCACAGAAGCTTCGTGGAACTCTCACATACGTTATGAAGGATGATGAGGGTTCTACAAGCGAAAAAATGGATTTCTCTCTATTTTTACCTTGTTCTTCATTTCTGATATCCACGCCGCTTTCAAGTACGGATTTTGCAAACCTTTTAGGAAGTGGGACTTTGGCAAACAAGAGCTCTGTTAAGGTTACAACACCAGAGACGGCGGAGTTTAACACAATAATCACCAAGATCTGTGTTCTTCTACACTTTGCAGTTGTGGAGCAAGTAGACCTAAGTGCGTCGTTGTACGCCTCTTCAATTCAAGGTCATCATCTTTGCGCTTTAGTCAAACAGTTACCGGATCACTCGGTAACCATTGACGGCAAAAGCACGGACGCTTCTTTGGTCTCAAATGTGCTTGAAGAGGTCAAATTGCTCCTCCAATCCCCGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q865S1	AP-3 complex subunit delta-1 OS=Bos taurus OX=9913 GN=AP3D1 PE=1 SV=2
O54774	AP-3 complex subunit delta-1 OS=Mus musculus OX=10090 GN=Ap3d1 PE=1 SV=1
O14617	AP-3 complex subunit delta-1 OS=Homo sapiens OX=9606 GN=AP3D1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003931 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06375 all species →	AP3D1	AP-3 complex subunit delta-1	Family	Interproscan
PF01602 all species →	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010474 all species →	Domain	AP-3 complex subunit delta domain, metazoa	Interproscan
IPR017105 all species →	Family	Adaptor protein complex AP-3, delta subunit	Interproscan
IPR002553 all species →	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22781 all species →	DELTA ADAPTIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015031 all species →	Biological Process	protein transport	Interproscan
GO:0030123 all species →	Cellular Component	AP-3 adaptor complex	Interproscan
GO:0006623 all species →	Biological Process	protein targeting to vacuole	Interproscan
GO:0006896 all species →	Biological Process	Golgi to vacuole transport	Interproscan
GO:0010008 all species →	Cellular Component	endosome membrane	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030117 all species →	Cellular Component	membrane coat	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12396	AP3D; AP-3 complex subunit delta	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.