Gene detail

Detailed information of XP_074611201.1 in Acropora palmata

Genomic Location: NC_133895.1:6588225...6597283
NR annotation: XP_029212349.2, centromere-associated protein E-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074611201.1

ATGCCGAAAGAGAAGCTTGATTCTCTATCCCTGAAACAAGTTCTCAAGCCCACGCAAATTGTGCCTTTTAATCACAGTGTTTCGTCAAGCAAAAGTATAAAACAGAAAAAAGCTGACTTCATTCTTGAGGAGTGTACTCCGAGTCTGTTACCAACCTCCAACAAATTGTATGATTTTGAGATTGGCAATGGCTTGGATGATTTTGAAGGACTGCCACTTATTGTGCGGAAAGATCGGCTTGTCCAAGAAATAGAAAACAGTCTGGCAGAAATTGAGGACCACTATTCTAACACAACTAAACTGGAGGAAGAAAGAACGGTATTTGAAATGGAAAGAAACAATTTGTTGAAAGATATTGAGGAAGCTATTACTGAGATTCAAAATCATGTGCTAAATTCACATGGATTGGAGCATGAGAAAGGAGTGTTCAAGGAGGAATGTGATGGCTTACGTGACCAAGTTGACCAATTGAAAAATGTATTGGGCAGCTCAACTGGCTTGGAAATTGGCAGCAACTCTGATGAACTGGAAAAACTGGCTTTGAAACAAGAGATAAATTCCTTGACCTTAGAGAATGAAAATCTCAAAATTAAAGTAAAGGATGCTGACGAAGGAGAGGTCCCTTCTGATATGATGTCGCGAGAACTAGAGTTGTTACGAGACGAGAACTCAAATTTGCAGAAACTCCTTCAAATGGCTGAAGAGTCGGAAGAGCACATGGGAAAAGAGTTGGAGTCTTGTCAAGCAAAACTCAGTGAGATTCAAAAACAGAATAATGAACTAACTAAAGAGAACAAAAGACTGGCTACTGAGAAGGAACAGCTGGAGTTAGACCAAGAAGATCTGGAAGAAGAGCTGTACAGTTTACAGACTCGATTAATGAAAAGTAAAGACCAAAATCAAAATGATTTTATGTTGAAGGAATCCAAGGAGGAGTTTGCAAAATCTCAAAGGGCGTGCAATGCTTTAGAGAAAGAAAACAATGTATTGAAAAAAAAGATTGAACAGTTCGAAGAAGAAATTAAAAGATTACAACGTCGTCAAGAAGAAGGAGGCACAACATTGGTTGCAGCAACGAAAACTTCTGAGAATAATGAGCAACAGCTAAAATCAGCTCTGGAGAAATTAAATAAGGAAACGTCTTCCCTTCATGAGTCTTTGGATAAAGCAGAAACGGAAATTGAAAATTTAAAAGACGAATTGAAGAGAGAAAGGGAGGAGAAAGAAAAACTAAAGGCGGCGTCAAGTGACACTGGGAAAAAGAAGAAGAGCAAGAAAGGAAAGGAGAAAGATAGTGAAAGTGGAAAAGAGAACGAAGGGAAAGTTGATGAAGTGGAAACATTTAAGAAAGAAATTTATAATTTGACAAGTGAATGTCAAGCATTGTCGGAAACAATTGCAAGGACGGCGAATGAAAAACGAAAGCTGTTGATTGATGTCGAAGCACTTACAGAAGAGAAAAATAAACTTGGGTCCAAGGTAGAAGAATTGGAAGGCGTTGTTCCAGAGCTAACGAAACTTAAATCGGAAAACGAAGAACTGAAGGGAAGTTATTCCAATCTGAAGGTTTTTCACGATGATCTTGCGCAAAAACTTGAAATTGCTAAGAAGAGTAACGCCGAGAAAGAGGAAGGCTTAAAAAGGACGCTGTTAGAGAAAGACGTCTTTGAACGACGGTTGAAGGAATTTGAAGAAACAGTAGAACACATTCGAAAAGAGTTGCAAACTTCGCAACAAAATTTCATATCCAAAAATGATGAATTGAAGACGTTACAAAGAAAGTTTGAAGAACAGAATAATAAGTTTTCAACAACAAGCGAAGGAAGTAGAAAGGAAAGAGAAAAACTGCGAAATGAGGTGCGCGAAATATCGGAGATGCTAAAAAGCAAGGATGAGGAGATGGGGTCTGTGAGAAAGACGCTTGAGGGGAGAGACTCTGAACTGCAAAATATGAGAATTACGGTTGATGAAATGCGGAAAGAACTGACACTAACCAAAAACAATCTACGAGAATCAGAGAAAGCCAAATTGGATTTTGAACAAAATGCTCGAAAGGCCGAACAAACTGTCGACGAACTTCAGAAATCGTCGGCTGGTTTGAACGACTTAGTGATGGAGAGGTCGTTAGAGCTTTCGCGTACCAGGAGGACTCTTGAGAAGAAGGTGGAAAAGTTGACAAAAGAAAATGCTGAAATGAGAAAGAAATATGGATTTGATGTCCCATCAGGGTCCACAACGCCGACAAGGCTGTCTCCAGTTACTGTACAAATGCAAAAGGATCCAAACCTTGATGTCAACCTGGAGCATTTCTCGCGACCATCGCGGCGAACACGGAATGATGAGACGAAGAGGCCCAACAGGGACTACAGCTCTTTGTCCAGTGGAACCATATCTGAGGGTACGAGGCAAAATAGCAGGGACTATAGCCCATCGTCCCGCGGGATTACAGCAAACAGACCGACGACTGATACCAGGGTGCGAAGATCAAGTGATAATAATAATGCTGCGAGTGACCGACAAACTCACGAGTCAGAGTTTGCTAAACAGTCCCGCGAGAATGGAGTTCCGAATGCGCGTTCATTTCCTCCAGAGTACAGAGTCATAGCGTCCGAAATTTTGCCTCCGTCTCCAAAACGGGAATTCACTAGTTCTGTGGTACACGTAGCGTCATCATCAGTTCGAGATCAAAGTCCCATGGCTGCTAATCGTGACACGGGTTTTAATCAGAGAAGGGACGAAGAGTGGAATAGAAACGGAAGAAGATTCGATGAACTGAGGCAAGACGATAGAGAAAGGCGGTCGTCCGGCAACTCAAACCATCAAGACAGCGATGAAGCGACATTTCAAGTCGTTGGATACAGACAATCAGGGGGGGATGCGTATGAACACTGGGTGTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007419 (this species only)

Pfam domain

No Pfam domain signature was detected for XP_074611201.1. This gene does have a gene model — the search simply returned no hit.

InterPro

No InterPro signature was detected for XP_074611201.1. This gene does have a gene model — the search simply returned no hit.

PANTHER

PANTHER term	Description	Source
PTHR45615 all species →	MYOSIN HEAVY CHAIN, NON-MUSCLE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000146 all species →	Molecular Function	microfilament motor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016460 all species →	Cellular Component	myosin II complex	Interproscan
GO:0032982 all species →	Cellular Component	myosin filament	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074611201.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074611201.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

69TPM > 0

2Conditions

46.7Max TPM

17.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	35	15.30	46.70
all_coral_tissue · baseline	38	34	19.14	32.71

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	46.70
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	35.65
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	35.56
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	34.77
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	32.59
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	30.60
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	28.48
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	27.56
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	27.37
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	27.37
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	25.01
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	23.10
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.96
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.42
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.09
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	21.87
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.95
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.79
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.28
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.78
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.34
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.08
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.30
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.67
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.11
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.45
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.25
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.20
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.07
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.63
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.28
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.34
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.50
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.92
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.95
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	32.71
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	31.91
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	30.08
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	28.91
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	28.68
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	28.67
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	28.31
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	26.97
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	26.05
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	25.50
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	25.34
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	25.23
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	24.71
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	24.52
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.92
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.75
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.66
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.59
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.35
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.23
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.08
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	22.88
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.48
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.01
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.51
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.24
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.21
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.76
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.73
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.25
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.89
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.19
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.63
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.29
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.