Detailed information of XP_074612136.1 in Acropora palmata

Genomic Location: NC_133883.1:18042332...18068946
NR annotation: XP_015777439.1, PREDICTED: adhesion G protein-coupled receptor A3-like isoform X2 [Acropora digitifera]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
E7FBY6Adhesion G protein-coupled receptor A2 OS=Danio rerio OX=7955 GN=adgra2 PE=1 SV=2
Q9HBW9Adhesion G protein-coupled receptor L4 OS=Homo sapiens OX=9606 GN=ADGRL4 PE=1 SV=3
Q923X1Adhesion G protein-coupled receptor L4 OS=Mus musculus OX=10090 GN=Adgrl4 PE=2 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004770 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02793
all species →
HRMHormone receptor domainFamilyInterproscan
PF00002
all species →
7tm_27 transmembrane receptor (Secretin family)FamilyInterproscan
PF13855
all species →
LRR_8Leucine rich repeatRepeatInterproscan
PF13927
all species →
Ig_3Immunoglobulin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003591
all species →
RepeatLeucine-rich repeat, typical subtypeInterproscan
IPR036179
all species →
Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR051963
all species →
FamilyAdhesion G protein-coupled receptor AInterproscan
IPR036445
all species →
Homologous_superfamilyGPCR family 2, extracellular hormone receptor domain superfamilyInterproscan
IPR001879
all species →
DomainGPCR, family 2, extracellular hormone receptor domainInterproscan
IPR017981
all species →
DomainGPCR, family 2-like, 7TMInterproscan
IPR032675
all species →
Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR003598
all species →
DomainImmunoglobulin subtype 2Interproscan
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR003599
all species →
DomainImmunoglobulin subtypeInterproscan
IPR017983
all species →
Conserved_siteGPCR, family 2, secretin-like, conserved siteInterproscan
IPR000832
all species →
FamilyGPCR, family 2, secretin-likeInterproscan
IPR007110
all species →
DomainImmunoglobulin-like domainInterproscan
IPR001611
all species →
RepeatLeucine-rich repeatInterproscan
IPR046338
all species →
Homologous_superfamilyGAIN domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45930
all species →
G-PROTEIN COUPLED RECEPTOR 124-LIKE PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan
GO:0007166
all species →
Biological Processcell surface receptor signaling pathwayInterproscan
GO:0004930
all species →
Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0004888
all species →
Molecular Functiontransmembrane signaling receptor activityInterproscan
GO:0007186
all species →
Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K08462ADGRA3, GPR125; adhesion G protein-coupled receptor A3-G protein-coupled receptorsko04030deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074612136.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
71TPM > 0
2Conditions
42.6Max TPM
18.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 39 16.75 42.62
all_coral_tissue · baseline 38 32 19.83 41.96

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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