Gene detail

Detailed information of XP_074612652.1 in Acropora palmata

Genomic Location: NC_133883.1:18799448...18825668
NR annotation: XP_044170991.1, LOW QUALITY PROTEIN: SH3 and PX domain-containing protein 2A-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074612652.1

ATGTCTCGAAGAATTCCTATAGAGGTGAAAATCATCGATGTTCAGAAACGCAAAATTCCTAGCAAGCATTATGTTTATGTCATCAAGGTCAGTTGGTCTGATGCAAGTGTCAATGTTATTTACAGACGATACAGTAAATTCTTTGATCTTCAAACCAAGCTTTTGGAAGAATTTCCTGATGAGAGTGGAGTAAAAGATCCTTCTAAGAGAATTTTGCCATTTTTACCAGGTAAAATCATCTTTGGAAGAAGTCATGTCCGTGATGTGGCATTAAGGAGAAAAGAGCCCATAAATGATTATTGCAAGGACCTGATTTCGTTGCCCCCGAAGATCTCCAGTTGTGATATTGTTTTGGAGTTTTTTGAGCCAAAACCAGATGATATAGATCCAGCAGCTACTGAGAAAGAGAAACGCAAGAAGGAAAAGGATTCAGCTGATAACATCAGTGGACCTGTATTGCTGGAGCTGTATGTGGCTATCGCCGACTACAAGAAGCAGAACAGAAATGAAGTCAATATGGTCGCTGGAGATGTAGTGGAAGTCATTGACAGAAATGAAAATGGTTGGTGGTTTGTGAACGTTGACGAAGAGCAAGGCTGGGTTCCCGCAGCTTATCTTGAGAGAGAGGATGGAACAACAGAGGAAGTCACAAATCAGTCGGAATTGGCAGAGAAATATATCACCACCTCGGCATACAAAGCAGAGCTAGATGATGAAATGTCGTTTGAGATTGGTGTTTTGGTTACTGTGATTGAGAAAAATTTTGATGGATGGTGGCTTGTGCGTTATCAAAATCGTGAAGGCTGGGCCCCTGCAATGTACCTCAAGCAACCCAGTCCCTCTCAGATTCAAGCTATAGGCTCCTCGTCGTTACAGAGGGGGGATGATGTTAATACAGCGCGCGAACAGCTTGCCGCTAAAGCACCAGGAAAATGCTGGGTCAGCGATCGATTATCGAAGATCAAAGCTCGGAAAGTGCCGCCTCGAAAAAGTTCGGTCAAAAGGTCGATAAACAAGCAGCCCCTACACATTGTCAACATGTCTTACGAGGAAACTGTGGCGTTAAATTCCGGCACGAAGACTCCAGAAGTGGAATATTTTACACTTGGTGACTTTCGTTCCATGGCCATCGATGGTGCTTTGAATTTCTCAGAAGGTGTTTCAGTGGAAGTGCTCGACAAGGCTCCCAATGGCTGGTGGCTGGGAAAAATTGGAGGCCAAGAAGGTTGGATACCATCATCTTACTTAGGAAAGAGAGGAAAGGAAAGTCCATCTCAAGAAATCCCTGGATTAGGAAAACAGCAGAAGGAGCGTCGACAGCAACAGGGTTCCGCAAAACGAATCGATTCAAATGGAGAAAGTCACCTGACAAACAGTGTGTCCAATATTTTGAAGTTATCCTCTGACGTGAAATCTGAAAACCATGGAAAGACGTTTGTTACTTTAGCGGACTATGAGAGTAATATTGATGGAGGCCTTTCGTGTAAAAAAGGGGAAATTGCTCACATCAGAGACAATCAAGATGGATGGTCATATGTCAAGATACAAGGTAAAGAAGGATGGATGCCGTCAAGCTATCTCGCTAATTGTTCGGAGAGGAAGTCTTCCACAACGAGACCTGTTCCCAAGTTAAAACCTTCTATAGCTGGTAAATCGCATGTTCCATCAACTCCGCAAGAAAAGCATGTTAGCTCTGTTCAAGAAACTAGGCCTGCTTTAGTCCCTGCAAAATCAATCAAGCCAGCTATCAAACAAACTCCTGTCCCAAAAAAACCCGATCGTCCAGGTAGACCCCAGATAGCGCTGCGCCCAAAGTTTCCTTCCCCGAATGTGATACATTCACCATCAATTGCTCAAAAGAATGTTACGGAGAAAAACAAAATTATCTGCAGAGCAGTGGAGTCTTTTGACTCAGCTAATCGAGAGAGCCTGTCATTCCGCAAAGGTGATGAGTTTGAGCTGTTGGAAGATTCTGGGAGTGGCTGGTGGCTAGTCAAAGGGAAGGATGGCCTCGAGGGTTGGGCACCTGCTTCGTACTTAGAAACAGTTCCCATAAAGCCAGTAGTACCTGCTAAACCAGTTAAACCAGTTAAACCTGCCAAGCCGGACCTACAAAAGGGAAACAAGTCGACGGGGAAAGCAGTGTTCGTGGCTTTGGCAGAATATGTTGATGAAGATGATAGTGATACGATTAGTTTCAAAAAAGGCGATCAAATGGAAGTTCTGGAAATGGATGAAGGAGGATGGTGGCTTGTGAAAATTGGAGATAAATCAGGTTATCAAAATCGTGAAGGCTGGGCCCCTGCAATGTACCTCAAGCAACCCAGTCCCTCTCAGATTCAAGCTATAGGCTCCTCGTCGTTACAGAGGGGGGATGATGTTACTACAGTGCGCGAACAGCTTGCCGCTAAAGCACCAGGAAAATGCTGGGTCAGCGATCAATTATCGAAGATCAAAGCTCGGAAAGTGCCTCCTCGGAAAAGTTCGGTCAAAAGGTCGATAAACCAGCCACCCCTACACATTGTCAACAGGTCTTACGAGGAAATTGTGGCGTTAAATTCCGCCACGAAGACTCCAGAAGTGGAATATTTTACACTTGGTGACTTTCGTTCCATGGCCATCGATGGTGCTTTGAATTTCTCTGAAGATGTTTCAGTGGAAGTGCTCGACAAGGCTCCCAATGGCTGGTGGCTGGGAAAAATTGGTGGCCAAGAAGGTTGGATACCATCATCTTACTTAGGAAAGAGAGGAAAGGAAAGTCCATCTCAAGAAATCCCTGGATTAGGAAAACAGCAGAAGGAGCGTCGGCAGCAACTGGATTCCGCAAAACGAATCGATTCAAATGGAGAAAGTCACTTGACAAACAGTGTGTCCAATATTTTGAAGTTATCCTCTGACGTGAAATCTGAAAACCATGGAAAGACGTTTGTTACTTTAGCGGACTATGAGAGTAATATTGATGGAGGCCTTTCGTGTAAAAAAGGGGAAATTGCTCACATCAGAGACAATCAAGATGGATGGTCATATGTCAAGATACAAGGTAAAGAAGGATGGATGCCGTCAAGCTATCTCGCTAATTGTTCGGAGAGGAAGTCTTCCACAACGAGACCTGTTCCCAAGTTAAAACCTTCTATAGCTGGTAAATCGCATGTTCCATCAACTCCGCAAGAAAAGCATGTTAGCTCTGTTCAAGAAACTAGGCCTGCTTTAGTCCCTGCAAAATCAATCAAGCCAGCTATCAAACAAACTCCTGTCCCAAAAAAACCCGATCGTCCAGGTAGACCCCAGATAGCGCTGCGCCCAAAGTTTCCTTCCCCGGATGTGACACATTCACCATCAATTGTTCAAAAGAATGTTAAGGAGAAAAACAAAATCATCTGCAGAGCCGTGGAGTCTTTTGACTCAACTAATCGAGAGAGCCTGTCATTCCGCAAAGGTGATGAGTTTGAGCTGTTGGAAGATTCTGGGAGTGGCTGGTGGTTAGTGAAAGAGAAGGATGGCCTCGAGGGCTGGGCACCTGCTTCGTACTTAGAAACAGTTCTCATAAAGCCAGTAGTACCTGCTAAACCGGTCAAACCAATTAAACCAGTTAAACCTGCCAAACTGGACCTACAAAAGGGGCACAAAGCGACGGCAAATGGGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1X283	SH3 and PX domain-containing protein 2B OS=Homo sapiens OX=9606 GN=SH3PXD2B PE=1 SV=3
A2AAY5	SH3 and PX domain-containing protein 2B OS=Mus musculus OX=10090 GN=Sh3pxd2b PE=1 SV=1
Q5TCZ1	SH3 and PX domain-containing protein 2A OS=Homo sapiens OX=9606 GN=SH3PXD2A PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000972 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF07653 all species →	SH3_2	Variant SH3 domain	Domain	Interproscan
PF00787 all species →	PX	PX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR051228 all species →	Family	NADPH Oxidase and PX Domain-Containing	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR003646 all species →	Domain	SH3-like domain, bacterial-type	Interproscan
IPR037961 all species →	Domain	SH3PXD2, PX domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15706 all species →	SH3 MULTIPLE DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016176 all species →	Molecular Function	superoxide-generating NADPH oxidase activator activity	Interproscan
GO:0042554 all species →	Biological Process	superoxide anion generation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24032	SH3PXD2; SH3 and PX domain-containing protein 2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074612652.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

65TPM > 0

2Conditions

41.9Max TPM

13.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	33	12.10	41.87
all_coral_tissue · baseline	38	32	16.03	28.01

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	41.87
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	34.66
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	34.58
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	26.39
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.74
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.27
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.00
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	23.78
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.72
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	21.37
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	21.32
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.98
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.91
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.26
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.79
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.25
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.40
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.38
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.22
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.76
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.70
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.33
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.41
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.95
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.92
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.97
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.79
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.35
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.09
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.44
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.63
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.35
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.03
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	28.01
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	27.92
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	27.10
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	26.32
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	26.21
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	24.32
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	24.31
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	24.05
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.88
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.77
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.48
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.41
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	22.34
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	21.83
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	21.82
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.69
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.62
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.61
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.48
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.36
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.27
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.83
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.18
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.78
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.65
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.34
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.79
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.46
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.16
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.30
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.49
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.48
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.