Gene detail

Detailed information of XP_074612661.1 in Acropora palmata

Genomic Location: NC_133883.1:1848645...1874887
NR annotation: XP_029189149.1, tyrosine-protein phosphatase non-receptor type 13-like isoform X1 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074612661.1

ATGAACTCTGCGGCTACAGTTGCGGGAAGAAGAGCTGACGACAAGGCCGAGGAGGCAGGCATTTTGATCGGCGAGGGAGACAAGCTAATCAACGTCGTCTTGCTAAATGGAGAAAGGCTTAATGTTAGAGTTCAGGCGTCAGCCACCGGTCAAGACCTGTACAACATCATTACCGATCATCTGGGACTCACGGAAACCACATTCTTTGGACTTATGATCATCAAAGATGGAGAGCATGAGTTCCTTGACTTCAATGAAAAGCTGTCTAAACTAGCTAAGTTTGCACCGCACTTGTGGAAGGACGATGTATCTTGTAATTCTTCGCTTGTCTTCACCATATTCTTCCGCGTCAAGTATTACGTGGAAAATATTTGTCTCCTACAACAACAATCAACTAGACACCTATACTATCTTCAGTTGCGGAAGGACGTCTTGGAAGGGGGAATTTACGTCCACGAGGAGACAGCTATGCTTTTAGCTTCGTATGCTCTACAGGCAGAAGTTGGCGACTACAACCAGAATGTGCATGGCTCTGATTACTTTGTTCCAGAACATTATCTCCCGCAGAGGGCGATCGCTAAGCTAACAGCGTCATCTATCAAGAAGCAGCTTCCCTCGATGCACAAGACTCACACCGGTTTAAGTGACGCACAAGCGGAAATAGAGTATCTCAAGGAAGCACAAAAGCTGCAAGAATATGGAATTATATTCAACAAAGTGTCTAAGTACAAGAAAGACAAGCGAGGTGGATTTAGCTTGGGAATAAGTGTGCGGGGTCTTATTGTTTACGAGGAAAGAGGAATCGTCAAGAGTCCAACTTTTCGCCATCCTTGGCAAAACATCAAGAGGATGGCCTTTCACCGGCGTCGATTTTATATCGAGGCTCACGGTGATCCAGAAACATCTAAGATGGTGTTGTACACCTGCAGCTATAAGAAGTCAAGATATTTGCTAAAGATGTGCACATCATTCTACAAATTTCAAATGATGATGGGTATGAGATTATCCAATCTCAAGGAATACCCAAGAGATGGAGTTGTAAGAATGAACGGTGTTGTGAAAACAGACGAGAGTGACTCAGTTGTAGGGGAGATAACAGAATCAACAGCGGCACCAGAATCAGGGCAAGACTCAGCAGAAGTCATTCAGCCATCTGGAGTAGGGCCAGCGATACATTTAAACGGATCAACGGGACAAGACCAACCGGTACAGGTCAGCGTTCATCCCGTTCAGCTGCAAAAGGTGGAAGGGAGCCTTGGACTCAACATAATTGGGGGCATTGAGCTGGGTGGAATTTATGTGAAGACGATGGCTCCTGAAGGACCAGCATCACTGAGTGGCAAAATTAACATCGGTGACAGAATCCTAGAAATAAACGGCCACAGCCTGGAGGGTTTATCGAGACAAGAGGCGGTTAACATTCTGCGGACTGCACCGTATGTTTGCACCATGTTGATCGAGAGCTGCGTGGCCTCGCCAGCTACACCGAACGGGAAGCCAGCAATGCCTGGATCTCAATCAACGTCTGCCTTTTACTCACCGAACAGACATCCGCAGATGCAGCAGCCCGTGATGCAAAGGCAGTCATCTTTTGAATCGCAGTACTCTTCAATGCATCAGCAGTTTGTACCAAGTCAAAGCCAACAGATTGAAGACATAGTTTCAGATTTCATTCCAATTGAAATTCCTAAACTGAACGGAAGTTTCGGTCTAAATGTCACGGGTGGACCAGAACTTGATGGAATTTACGTGAAATCTCTTCTCCCTGGAGGCGCTGCCGAAGCTTCTGGGAAAATTCGGAATGGGGACAGAATAGTGGAAATAAATGGAGTCGCCATGGAGGGTCTAAATCGCAAACAGGCCGTTGAGTTGTTGAGGCGTTCAGCAGCCACAGCTACTCTGGTTATTGAGCGCTATAGACAGCCACAACCTGAAGTCCCTCCACTCGAGGACGTAGATGACCTCTTGAGAACCTCGCCAAACTGCATACTTGTGGAGCTACAAAAAATGGACCATTCATTTGGATTCAGTGTTGTGGGTGGTCCAGACTTTGGTGGAATTTTCGTTAAGACCATCAATCCAGATGGAGCGGCTGCCATGGATGGTAGAATAGGAATAAGCGACCGCATAGTAGCCGTAAATGGCGTAAATCTGACTGGGGCTACGAGACAAGAGGCAGTTGATGCTCTCCGAAATTCACCGATTATTGCTCAGCTTGTGGTAGAAAAATGTGCAGCTGAAGATCATTTGACCAACAGTATGAGTAATAGTAGCGGACCGCCAACACCTCAAGGTTTAAGATACGGAGCTGTGCACTACAATCAGTATCAAGGTCACCCTGCAGACACTTATAATGATTACAGTATGGAAGATTTACCTTTTGAAGTGTATCTCACTAAAGGCCAGAGTGGATTGGGTATGAGCTTGACCGGAGGAGACAGCGCAGGACCAATATACATAAAGAAACTGGTACCAGGTGGCTCAGCGCTTTTGTCAGGACAGCTCCAAGTTAATGACGTTATTCTTCAAGTCAACAACAAAAATGTTGATCGTATGTCGTATAGGGACGTTCTCTCTATTCTTCGCAACTGTCCTTCGGAAGTCAAACTGTTAGTTCAGAGATCAAGGGTAACATCTCATCTTCCATCATACCCAGGTTACCGTGCGGGCAGCGACCGAGCCAGTGTAGATAGTTATGGAAGCTACAGTAGTATGTCGAGTATTTTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q12923	Tyrosine-protein phosphatase non-receptor type 13 OS=Homo sapiens OX=9606 GN=PTPN13 PE=1 SV=2
Q64512	Tyrosine-protein phosphatase non-receptor type 13 OS=Mus musculus OX=10090 GN=Ptpn13 PE=1 SV=2
Q68DX3	FERM and PDZ domain-containing protein 2 OS=Homo sapiens OX=9606 GN=FRMPD2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002205 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09379 all species →	FERM_N	FERM N-terminal domain	Domain	Interproscan
PF09380 all species →	FERM_C	FERM C-terminal PH-like domain	Domain	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF00373 all species →	FERM_M	FERM central domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019749 all species →	Domain	Band 4.1 domain	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR018979 all species →	Domain	FERM, N-terminal	Interproscan
IPR018980 all species →	Domain	FERM, C-terminal PH-like domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR052074 all species →	Family	Non-receptor Tyrosine-protein Phosphatases	Interproscan
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan
IPR019748 all species →	Domain	FERM central domain	Interproscan
IPR035963 all species →	Homologous_superfamily	FERM superfamily, second domain	Interproscan
IPR000299 all species →	Domain	FERM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46900 all species →	TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074612661.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.