Detailed information of XP_074612892.1 in Acropora palmata

Genomic Location: NC_133883.1:26187073...26226701
NR annotation: XP_044168215.1, dedicator of cytokinesis protein 1-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q14185Dedicator of cytokinesis protein 1 OS=Homo sapiens OX=9606 GN=DOCK1 PE=1 SV=2
Q8BUR4Dedicator of cytokinesis protein 1 OS=Mus musculus OX=10090 GN=Dock1 PE=1 SV=3
Q92608Dedicator of cytokinesis protein 2 OS=Homo sapiens OX=9606 GN=DOCK2 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001194 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06920
all species →
DHR-2_Lobe_ADHR-2, Lobe ARepeatInterproscan
PF16172
all species →
DOCK_NDOCK N-terminusFamilyInterproscan
PF20421
all species →
DHR-2_Lobe_CDHR-2, Lobe CRepeatInterproscan
PF20422
all species →
DHR-2_Lobe_BDHR-2, Lobe BDomainInterproscan
PF14429
all species →
DOCK-C2C2 domain in Dock180 and Zizimin proteinsDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR046769
all species →
DomainDOCKER, Lobe AInterproscan
IPR042455
all species →
Homologous_superfamilyDedicator of cytokinesis, N-terminal, subdomain 1Interproscan
IPR027007
all species →
DomainC2 DOCK-type domainInterproscan
IPR016024
all species →
Homologous_superfamilyArmadillo-type foldInterproscan
IPR027357
all species →
DomainDOCKER domainInterproscan
IPR032376
all species →
DomainDedicator of cytokinesis, N-terminal domainInterproscan
IPR046773
all species →
DomainDOCKER, Lobe CInterproscan
IPR043162
all species →
Homologous_superfamilyDedicator of cytokinesis, C-terminal, lobe CInterproscan
IPR036028
all species →
Homologous_superfamilySH3-like domain superfamilyInterproscan
IPR035892
all species →
Homologous_superfamilyC2 domain superfamilyInterproscan
IPR043161
all species →
Homologous_superfamilyDedicator of cytokinesis, C-terminal, lobe AInterproscan
IPR001452
all species →
DomainSH3 domainInterproscan
IPR026791
all species →
FamilyDedicator of cytokinesisInterproscan
IPR046770
all species →
DomainDOCKER, Lobe BInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45653
all species →
DEDICATOR OF CYTOKINESISInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005085
all species →
Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan
GO:0007264
all species →
Biological Processsmall GTPase-mediated signal transductionInterproscan
GO:0031267
all species →
Molecular Functionsmall GTPase bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K13708DOCK1; dedicator of cytokinesis protein 1-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074612892.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
73TPM > 0
2Conditions
71.1Max TPM
29.9Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 40 25.17 71.15
all_coral_tissue · baseline 38 33 35.69 63.53

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP