Gene detail

Detailed information of XP_074612977.1 in Acropora palmata

Genomic Location: NC_133883.1:1087597...1105326
NR annotation: XP_029188638.2, AP-4 complex subunit epsilon-like isoform X1 [Acropora millepora]
Species abbreviation APALM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074612977.1

ATGGCCTACAAAGGGTCGGCAAATCTCCCTAGCTTTATCACTGGATGTTACGGACCAAACTCCAATAGCTCACGAGCATTTCAGAGTTTAGTGAGAGCTATTGGAGAGGCAAAATCAAAACATGAGGAGGACAGAATTATTGTTAAGGAGTTGGGTTTACTGAAAGATAAGCTCACTCAGCGAGATTTATCAACGAAAGAGATGCGTGAAAATTTGGTGCGCTTAATTTACTGTCAAATGCTGGGTCATGACGTCTCGTCTGGCTATGTGGAGGCCATCAAGTTTGCTGAACAGCAAAGCACCTTAGACAAGAGGGTTGGTTACTTGGCGGCTTCACTATTCCTTCATGAAGATCATGAACTCATTGTCCTTCTGATCAATACACTCCAAAAGGATCTGAAAAGCACTAATGTCATAGAGGTGTGCTGTGCACTGACTGTTGTTTGTAAGTTAATTAATAAGGACATGATGCCCGCTTTACTGCCACAAGTTCTGCAGCTGCTTCAGTCCAAAAGGGATATTGTTCGCAAGAAGGCAGTCATGGCATTGCACAGTTTTTACATTAAAAGCCCTTCATCAATTCCTGATCTAAAGGAGCATGCAAAGAAGGCCATTATGGACAAAGACCCGGGTGTTATGTGTGCATCTCTTCAAGTCTTTAATGAACTTATAAAGGCAAGCCCTACTGAATGCAAAGATCTTGTTCCTGTATTTGTAAGCCTACAGAAAATGATAGTAGAAGGAAAACTAGCACCAGAGTACGATTATCATGGTGTGTCATCGCCATGGATACAGGTCAAACTCCTGAGGATGCTGGGATTGCTTGGTGCTGATGATCAAAGAGCAAGCCAGAAGATGTATTCTGTCCTTGGGAGGACATTGACAAATCTGAACACTAATTCTCTCATTAGTTATGCTGTGGCTTACGAATGCACTCGGACCATAACTGCCATTTATCCTGATAAAGGTCTGATTGGCAAGGCTGCAAAATGTGTCGGGATCTTCCTTGTGGCTAAAACAAACGATATTAAATATGTTGGAATAACTACATTGACCTCGTTGCTTCAAGTCGGCAGTGGTTTTGTAATGGAGTCCGCTTATCAGCGGTTTGTTATTGACTGCCTGGATGATCCTGACGAAACACTCAAAAGAAAGGGTAAATTTTCAAGCATGGCCATGATAAGGTTTACCCTGAAAAAATCAACTTGCTGGTTAGAAAAAAGCCAATCCGGACAGGCCAACTGCACCGTCCAACGAAAGCAAGCTCATAAGCCTATATTTCCTGTTCTGAATTTTGTCTTGCTTGGCACGCTTGATCTTTTGTGCCACATAACAAACGCCTTCAATGTGGAAACAGTTTGTGAGAAGCTGCTATCATTTCTCAAGTCGACAACAGATGTTGATTTACACTTCAGGGCTGAATTAGTTGATCGGATCACCGAACTTGCTGAGCGATATGCGCCGGATAACTCGTGGTACATCTTGACAATGAATGAGATATTTGAACTTGGTGGATCTCTTGTAAGAGAAACTGTGTCGCATAACTTGATGCGATTCCTCGCGGAAGGAACAGATGACGAAGATGCAGACAACGAAATCCGTCGATTCGCTGTTATGTCGTACATGGATCTACTTGAAAAACCAGTTTTATCAGACATTCTAGTCAGAGTTATTTGTTGGGTGCTAGGGGAATACTCTTACACAGCCTCTGAGTATGAACCTGAGGTCATTCTCGAAGAACTGATAACTTTACTGGAGAGAAAGTTTGAAGATCCTGGTACAAAGGCGTGGGTGCTGAGCGCCATTGGAAAGCTGATTTCACAAATGGGACAGCCGGTGGGTAGCATGAGAGATGTGTTGGAAAAATACGCGTCTGGAGTGGATGTGGAGTTAAGACAGCGTAGTTTGGAAATTGACAAACTCTCTAAAAATACAATTGTCATGCAAAGTGTTTTGCCTGTTGATGGCTGCTGTGAGGATTTAGAGGTTGACGAATCGTTATCTTTCATGGATTCCTTTGTATCCGAAGCACTGGCAAATGGAGCATCGCCTTACAAACCGATGAGCGAGCGAAGAGTCGAGGAAAAGATCAAAGAAACACTGGACCAAGGACCAACGCTAAATTTTACTCCTTACGAGAATCCGATTAAAAAACCTATCAACCCTCCTACATTGCAGGCAGATAAAAATCTTGCTGTAACAGAGGAACGTGCTAAATCTCAAGAAATTCCAAAAGATGAATCTAAACTAAAAAAGAGACCTAAGGAAAAAAAATTAGAAAATCCTGTGTCTACTGAAAAACTGTTTACTGGAAAGGCCATATGGGGGCCTGGTGGCTACGCTAATGATCGCGCGAGGTCTGGGTCTGTAGATTCCAGCAATAAATCGGATTCCTCATCGCGTAGTACTGGATCTGAGCAGGCAGCTGTTAAGACAAATTCTGAGGTTAGTTGCAGTGCTCCTGTTGCACATCGAGACGATGCACGCAAACAGCACTTGGCTGCTCAGCTCTTTAGTGGTGTCACAGGGCAGCCTCGTTCAGCTTCGCGGAGAGGACACTTCGGAAGCAATAGACTGATTAAACATTCTCCAAAAACAAATCCTAGGGCCACAGGGTCACCACCCATTGACGGTTTTTATCATGTTGTACATGACCTGAGATCCTTGTCGACAGAAAAGGCTGATGTAAATTTACTGCAAGATTTTGATAGTGATCAGGGTCACGCTCATGAAATAGAACGAACGCCATCTATTGAGCATGCGCTAATTCCAACCTTAGACGTCAGATCATCACTTGATAATGAAAATTCGACCACTGAAGAGTCATGCTATTCCGACCTTTCTGTGTCTGCACCTTCGAGCAGCAACTTTGGATTTGGACCGGAAAAGCATCTGCTGGACGACGAAATAGGAGTTAAGCTCCATTACCAAAAGCTCACAGGAACCCCAACTGCTTCCCTTTCAGATGATTTGGTCGGTTTTCCGCATTCTCAGGAAGCTTTGGAACTCTGCTCCGACAGCAATCTAAGAGTCACGCTGCAAAAAGTGTGGAAACCCGGTGAACTCGTACTGGTTCTTTATTTGACCAATCAGAATCAAGCAAGTGCTTCAATTTCTGATGTCATCAGCGCATTGGAAGCACCGTCCAATCTCATTGCTTTGTTTGATTCGTCAGCTGGCAACAAATTGCAAAATGACAACATTGGACCACTTTCTTGGGTCCGACATAAGGTTGTTTTGAAATACCAATCGCCTGCTCTTCACATGAACTTTGGTGGAAAGATTTCCTACAGAGATCCAAACAGAACATTGAGGCACTTGTTTTTCAACCACACTCTTAGTATGAAAGACATATTACGGCCGCTTGTGATAAGCACCGAAGAATTTGAACTAAAATGGACTGATGCTTCGTTTGAAAAGAGGCAAAAAATGTTCAGCTCTTCAAGGAATTGCCAAGAGTTTTCTAAAAGAGCTGAACAGGAGTTAAATATTTACACAGTGGAGATAATAGGTGGGAAAGTTATACTTGCTGGCACTTTGATGGAATCTGGGATATGCTTGTTGCACGCAAGTTGTGATGGTGACTCGTTAGAACTGTCAATCAAATCATGTAATAGGCTTCTTAATGACGCAGTTCTTAAGCACTGTGTGACCGTCTTTAGATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UPM8	AP-4 complex subunit epsilon-1 OS=Homo sapiens OX=9606 GN=AP4E1 PE=1 SV=2
Q80V94	AP-4 complex subunit epsilon-1 OS=Mus musculus OX=10090 GN=Ap4e1 PE=1 SV=3
Q8L7A9	AP-4 complex subunit epsilon OS=Arabidopsis thaliana OX=3702 GN=At1g31730 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002707 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01602 all species →	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan
PF14807 all species →	AP4E_app_platf	Adaptin AP4 complex epsilon appendage platform	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017109 all species →	Family	Adaptor protein complex AP-4, epsilon subunit	Interproscan
IPR050840 all species →	Family	Adaptor Complexes Large Subunit	Interproscan
IPR002553 all species →	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR028269 all species →	Domain	AP-4 complex subunit epsilon-1, C-terminal	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22780 all species →	ADAPTIN, ALPHA/GAMMA/EPSILON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015031 all species →	Biological Process	protein transport	Interproscan
GO:0030124 all species →	Cellular Component	AP-4 adaptor complex	Interproscan
GO:0140312 all species →	Molecular Function	cargo adaptor activity	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030117 all species →	Cellular Component	membrane coat	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12400	AP4E1; AP-4 complex subunit epsilon-1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.