Gene detail

Detailed information of XP_074613396.1 in Acropora palmata

Genomic Location: NC_133883.1:4086481...4115969
NR annotation: XP_029204176.2, uncharacterized protein LOC114968227 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074613396.1

ATGACGGGCGCTTGTGCTTGGAGTTCTGACAAAGATCTTGTACCTGAAGACCAGATTAAATGCTTACTTTCCTTGCTCTTCGAAGCTGAAAAGCGTAAATGGGAAGCAGGGATTTCACCCGTGAATTCTTTGGAGCCCGACAATGCACAGACAGAGATCGGAAAACCACGCTGTTCATCTGTTGATACTGGTTCTCATCTGTTGGGGTATGGCCAATGTGTCACTCAAATTCACAGCTTCTTTCATGATTTTGAACCCAGACGTTACTGCCTGAAAGCCACAACCAACAGGAAGAACCTTGACAGACCTTCCTCACAGATGAAAGTGGTATCTGATGAGAGCTTGCAATCTTCCATAACACTTTCAAGTTGTAGGAGTTCACAAGAACTTAAAGAAGGTTTTAATCCAAAGAGTCCGTCATTTGAATTATGCAAGAACGCATTACTGTGTGCCAAATTTCCAGTGCTCAGTTTGTCACAGACAGAATGTTCCAGTACACTATATTCGGCAACTCTATCACCATCAATGCAACAGAAGGCATTCTCATTTTCAAAAGTTTCCAAGACCAGCTCTGTTCATCCTGATCCAAAGGCAAATTCTCCACAACTGTCAAGAGATGATTGTGTTTCTCCAGAAGTTTCTTTTGCAAAGTTATCAGAGGACTTGCAAACCTTGGTAACCAAAGTATTTCAACTCAAAAATAGGGACCGCCAATATGTATTTGAAAGAGTACCTCGGGCAATAAAGGATTCACCAAAGCTTCTAGTTGAGACATTGCTGAGTCAGAAAGCTGTGCTTGAGCACAACAACCACCCATTTTACCGTGTCAATGCCTTCCTGGACAAGAATGCATACAGTGAATGGGTCATGTTGGAAAAAGATAAAATAGAGTGTTTAATTGAAAGTTTCTGGCACAAAGCTCGTCTCCCTGTGCGTGAGTTGCCTCTAGAAGACATAAACTTCCACAAACAGTACGAAGATTTAATGAAGAGAATAATAAAATTCGAAAGTAGCAACAAGGAAGTTCATCAAGTTCATCATGGAGTGGCACCATCCTCTCCTCTATCAGAAAATGCTTGTCGTTTGTTGCAAGAATTTCAACTTAGATTCGGAATCGGAACATTATTTAGCAAAATCTCTCACCTGAAATACTTTGTCGATCACCTTCCAGTTGCTAATGAGGTCTGGTATATGGAACATGTCAGGTGTTGTTTGAAAGATGTTATGGACAATCTTAATTGTCCAGAAATTTTCGTTGAGAGTGAGTTCAAAACACTTGTGTCTATACTATCAACATTACTGAGAAAAACAGAGTACGCCTTAACTAAGGACGAAATGAAGAGCCGATATGAGCGCCTCAAGGTCATTGCTTTAGATGAGTTAAACCAGGATGATTTGTCAGCTCCCCTCATGATCAAACTGGTTTTTGAAATCCGTCGCGAGGTTAAACAATACAACTCATTTTATAATGAGGCGTTTTCCAGTTACTTTGATGTGATGGAGCGTGGAACATTCCAGTTTTATTCCTTGCTGATGTCAGATATTGAGCAGCTCTGTGAAAACCCTTCTCGAGCTCGCAAGCCTAGTGGCGTGGAACCCGATTTACTTTGCTTGGCCTTTCGATTATCTAATCTGGACAAAGATTGGTCGAAATTCATTCCCTTCAGCCTTCAGAAATGGCGTGGGCCATTTAAGCGTATCGCCCTGCAGTGGTTGGATGCAATCAATCATTCATTCCGAGCTCTTGTTCCTCAAATGATCTCTTGTGACTCATGGACAGCAGCCGAACTAGACTTTCATATAACACCAAGAGGGAACAACACAACCACTGCAAGACGTGAAATGCAGAAACCTTGCAGTTTGGCGAATTCAAGAGCAGGTTTTCAATCTTTGCCGCATTCACAGCTTTCTGCATTTAATACTGTTCGCCCCTCATCTAGTCTTCCTGTAGAGACCTTACAAAGTGCTACAGTGTCGATTGGTAAGGGTAAGTCTCAGTCAACAAAGGGCTCTAGCCCTGTGCCAAGGGCAAAGAGTCCAAAACGTCCGAGGGAGGGTATGTTACCTGATTCTAGTTCAGGTGAAGAAACCCTTAATACTCAAAAGTGTCATGTAGTTGTCCAAATACATAGCCCGAAATCAAGACGTGGATGTAGAGTTAAAGATATGAACAACTCAAATTCTCAAGATGAAACTCCAAGCAAGCTTAATCCTGCAGCACACGCTCCTGAGACCAATAAAGACAACGTGCTTTTGGAGGGTAACCTTGAAGCAGAAACGCCATCATGTGGCTCACAAGTCCCAGTGAGTATGCAAGAAGGTGACTTTAAAGTACCCGAAGGCCAGGACGGTGCAGAAGCAATGGTCACCGAACCAGATAGAAATCAGAAGCTTGTGGCCATGGGGGAGGAAGAGAATGGTTCAAAGATTGGGAGCAAAGATGTGATATTTGAACCTGGATACACAGAAGACTCTGTTAACTCGGAAAAGCACAAGACGGATTTACGCGAGGATGGTTTTGATTGTAACCTTAGCACTCCTTTCGAGAATGAATCTACCAGCGAGGAGTCTGAGAGTAAGATGTTATCTCGCTCTCCAGAGATGTCTATTGGGTGCGCTGCTGGTGGTAAGGAGTCTCCAGGAGGCCTAGCTCATCATGAGTACAACAGGGAAAAGGGTCCAAGTCGTTCTCCTCAAGAGAACAAGTCCACTTGTGCCAAGGTTGTGACGCCAGTAGAACATGTAAGTGTTGGCGGTGAAGGACCAGGTTGCTACGTCTGTGAAAGATGTCCTACAAAAGATATCTGCCCTGGGAAGGCCAATAAAAGTGAACAAACGAGTGGAGCAGGTTCAAAGCCAAGTGATTCTAATAGCACCCTTCCAATACCTAGTACTCCCATCAACATACCGCCCCGTTACCCCAAGAAACTCATCACTCGGCTGCGCGACAACCCTCGTGCCTCTGTTGGATCAGCTCAGTCTGCTGCCAGTTTTTTTACTGCTGCTGAGTCCATAGAGAGTTTTCACAGTGCACGATCTAAAATAAGTGACTTGGAGTTTTCCAATCCAAAAAGCAAAGAAAACAGTGTCGATCAATTAGAAACACTCTGTAACTCACAGGATAATCCAACACTAAATTTAAGTCCCAATGATGATCAAATAGACAAATGCCCAAATGTGGAAGGAAAGCATGAGGCAAGCCAGGTGTTTCCCATTTCAAGTTCCTTTGTAGATGTATTATGTGCTGTTAACCGTCTTGCGTCGTTTGCCAGTCATCTTTGCGAGATCCTTTGTCCAGAACGTTTGCAGCAAGATGAAAAGTTCATGACAATGAAAAGAGAGCTCTGCGATAAACTGATTCAGGTAGTTAATTCGTTTGTAAAGTTGTACTCAGACAGTATCCTTGCAATGGAGACGTGTGGGTTACAAGAAAACGTTCTTACAGAAGTCTTGGATGAAAGACTTCAGCGATATCTGAAACTGGAGCGAGAAGCTGGGCATTTGCAAGGCTGTCGTTACGATGCCAGCAGGTTTGATCCCCCGTGTGAGGAAATGTTACGAGCAGAAGTAGATCCTCGCCAATTTGAACCGCTTACCCAACAACAGATGGGCGTCCGTATAAGCAATGTGGCGGTGTTGAGAAACATACTGCCATGGCTATGCGAGAATGCCGTCAAAGTTGTTGACAGTCCTGCTTCACTTCCCGCTGCTGTTCATCATGGTTTTGAAAGTAGCGTTGAAAGTCTGGCGTCACATTCATTTTCATATTGTGAATACGGGCCACGTTTGGATGACGTCACCAGCAGTGTTGCAGATGCCAGATGTAATGTTTCTGAGACGAGGGTGGATGAGCTTCTCAACCAAGATACGTTTGCGGATGATTTGGATCACCTTTGTATACTGGAAAGAGCTCTGCTCACGCTTGTTGCCTTCAGGATGAGCAAATTCTTGAAGCCAGTCTTGAGCAATTTACTCAATATTGATCTCCCACGATACGACATCAGAAAACGGCTGAAACCAGCCTTACATTTCCTTACATGCGAGTTGCGTAGATTCCATAGTGTTCTCTATCCAGATTGTTTCAACAGACTTCTCAATGAAGTCTGGGTTTCTGTTGCTGAGATGTTCAAGGAAGAGTTAAGTCGTTTGGAGAAGAGACGAGCTTCGGCGTCGAAACATTGCGAGCTCCTCTTGGAGGCCGAAGCGTATCTTATGAAGTTTTTCCATGCCGAAAACAGTGGATTAGGATGTGATGAAATGAGTGAAACCTTGGGATCATTACAAAAGGACTTGCAGTTATACACCTTGCCAACAGACAAGCTCATTACACTGTACGATTCATATTTCACGCAGTATTTAAGAACGCAGTCCGACAATCAAGCGGATGTACATGCTTCGACGACCAGCGTCACATCGCATCGTGCTAGTGCCCCCGCGGACTCTATTTTTCAAGCTTTACGCAAAGATTTGCATACAATTCGCAAGTGTTTTAGTGGAGCTGAGCTTGTGGAGTGGTTAGAAAACTATGTGCGGGAAAATGGCCTGGAAGGCTTTGGATCTTACATTGGATCTGGTGTTGAGTTAGGTCAGTATATGTTAGAACAAGGAATCGTTACCTGCGTTACTTCCCCACCACTCAATCAGCAACCAACAAGGAGAAAAAGGAACCAAGACGAACCGGTGTTCGTTGGAAGCAGAACGACAGAGAAAGGGAAGGTGTACTGTGGCATTTATGGATCCTCGGCTAACTCTTCACGGTCTTCGTCGCGGTCCACAACCAAGGACAACTCGGAAAGCGAAAACGAGGCTGATGATGAATGTGAAGATGACGATGTCCATGATTTCTTGGGCAGCGGTAGTGATGTGTGGGCTCGCCAAACCAGTGTCCCATCAAAGCATAATGCAAGGTTTTTCAATAACCACGACGCCTTGTATAAGTTTGTCTGCGAGGAAGACAGTCGTAGAAGTGAGATTAAATTTCGTCTAGGGATCCGTGATAGGCAGAATTTATGGGGCGAATTGAGAAACATTTTGTGTGTATTATACACCAGAAAAGGTTCTGATCGGATGGCTCGTGATTTTTTGAAGAAGGTACCAACCGAATATTTAAACGAATCTGTAGAGTATTTTCAACTCACGGCAGGGCTGTCATGTTGGTGTTCCTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003712 (this species only)

Pfam domain

No Pfam domain signature was detected for XP_074613396.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR052095 all species →	Family	UNC-13 domain-containing protein	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR014772 all species →	Domain	Mammalian uncoordinated homology 13, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45999 all species →	UNC-13-4A, ISOFORM B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0099503 all species →	Cellular Component	secretory vesicle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074613396.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074613396.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

76TPM > 0

2Conditions

49.7Max TPM

23.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	42	19.83	41.83
all_coral_tissue · baseline	38	34	27.86	49.66

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	41.83
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	39.58
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	39.41
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	39.18
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	38.42
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	35.98
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	35.55
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	34.29
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	32.98
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	31.61
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	30.65
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	30.36
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	29.94
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	26.31
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	26.29
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	25.85
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	25.27
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	23.62
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.00
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.95
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.63
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.46
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.65
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.65
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.89
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.16
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.10
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.89
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.71
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.41
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.71
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.95
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.22
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.77
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.66
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.37
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.15
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.50
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.09
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.92
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.89
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.52
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	49.66
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	43.93
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	43.77
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	43.65
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	42.68
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	42.17
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	41.01
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	40.89
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	38.32
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	37.25
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	37.23
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	36.66
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	35.97
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	35.79
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	35.47
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	32.74
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	32.29
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	31.87
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	31.55
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	30.84
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	29.58
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	29.47
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	29.46
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	28.16
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.21
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.19
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.17
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	21.55
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.52
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.98
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.59
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.07
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.97
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.13
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.