Gene detail

Detailed information of XP_074613554.1 in Acropora palmata

Genomic Location: NC_133883.1:4198141...4201392
NR annotation: XP_015748936.1, PREDICTED: heat shock 70 kDa protein 1-like isoform X1 [Acropora digitifera]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074613554.1

ATGCCAGGCGAGATTGCTCCTGCCATTGGAATCGACCTCGGAACAACTTATTCCTGTGTTGGAGTATTTCAACACGGCAAAGTCGAGATTATTGCTAACGATCAAGGCAATCGTACAACCCCTAGTTTTGTTGCCTTCAACGAAACAGAAAGGTTAATCGGAGAAGCAGCCAAGAACCAAGCAGCTCTCAACCCAAGTCATACGATATTTGACGCAAAGAGACTCATCGGTAGGAAATTCGACGATCCCACTGTGCAGTCCGACCGAGACAACTGGCCTTTCCAAGTCGTCAATGAATATGGCAAACCAAAAATTCGCGTTCAGAGCAAGGGAGATTGGAAATGGCTTTCACCAGAAGAAGTCAGCTCAATGGTGCTCATTAAGATGAAAGAAACAGCTGAGGCTTACTTGGGACAGACTGTGAAGAATGCGGTGATTACAGTGCCTGCGTATTTTAACGATTCACAAAGACAGGCCACAAAAGACGCCGGTGTGATAGCGGGACTGAACGTCAAGCGAATTATCAATGAGCCCACAGCTGCTGCCCTTGCTTATGGTTTGGATAAAAACCTCCAGGGAGAAAAGAATGTCCTGATTTTCGACCTGGGAGGAGGAACATTTGACGTGTCCGTGCTGACAATCGATGAAGGATCACTATTCGAAGTTCTTTCAACCGCCGGCGACACACATCTCGGTGGAGAAGACTTCGACAATCGTTTAGTGGATCACTTTGCGGAGGAATTCAAGCGCAAGTTCAATACGGATCTAAAGGGAAACCCCAAAGCCATACACCGCCTAAGGACAGCAAGCGAACGAGCCAAACGATACCTTTCGTCAAACACACAAGCCTCTATCGAGGTGGATTCACTGGCTGCGGGAATTGATTTTCACACTAAAATCACACGCGCTAAATTTGAAGAGCTTTGTCATGATCTTTTCAGTTCATGCCTGGAACCAGTGGAAAAGGCTCTTCGAGATGCCAAGCTTGAGAAGTCCGCGATACACGAGATCGTGCTAGTTGGAGGCTCCACAAGAATCCCAAAGGTTCAGCAGCTTCTGGAAGAGTTCTTCGACGGAAAAAAGTTGAACAAAACCATTAATCCTGACGAGGCAGTGGCATATGGTGCTGCAGTTCAGGCCTCCATTTTGTCAGGTACCCGAGGTGATGGTAAGATAGGAGATATCTTATTGCTTGATGTTGCTCCACTAAGTCTTGGTATTGAGACTGCAGGTGGCATAATGACCAGAGTGATCGAACGGAACTCCCGCATTCCGACCAGCATGACACGAAAAGAATTCTCCACCTATGCAGATAACCAGACAGGTGTTACCATTCAAGTTTACGAAGGAGAACGAGCAATGACCAAAGACAACAATCTCCTGGGACGATTCGAGCTGACAGGAATCCCCCCAGCACCAAGAGGGGTACCCAAGATTGAAGTCTCTTTTGACATCGACGCCAATGGGATCCTTGCCGTCTCCGCTAAAGATCAAAGCACTGGAAGAAGTAACGCAATCACCATCACCAATGATACCGAGAGATTGTCTAAAGATGAAATAGAACGTATGGTTGCTGACGCCGAAAAATACAAAGAGGACGATGAGACGCAACGTGAAGAGATCGCTGCAAGGAACAGGTTGGAAAACTACCTGTACAGTGTCAAGCATGCAGCAGAAGATCCAAATCTAAAAGACAAGCTGAATACTACTGATTTGGAAACACTAACGAGCAAGACTCAAGAGGTGATGGAGTGGTTAGAAAACAACTCAACAGCCGAAAAAGAAGATTACGAAAGGAAAGAAAAAGATCTGAAGGAAGTTTGTTCACCTATCATGTCCAAAGTACATGGACAGCAAAATTGCCAGCGACAACAGAGTAATTTCCAGCGGCAACAGAGTTCAGACAGTGATGGATCCTCACTGGAAGAAGATTACGAAAGGAAAGGAGAAGATCTGCAGCAGCGGCGACAGAGTAATTTCCAGCGGCAACAAAGCTCAGACAGTGATGGACCCACACTGGAAGAAGATTACGAAAGGAAAGAAAAAGATCGGCAGGAAGTTTGTTCACCTATCATGTCCAACTTACATGGACAGCAAAATTTCCCATGGCGACAGAATAATTTCCAGCGGCAAGAGAGTTCAGACAGTGATAGACCCTCACTGGCGGAAATAGATGATTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P41825	Heat shock protein 70 A1 OS=Anopheles albimanus OX=7167 GN=HSP70A1 PE=3 SV=1
P41826	Heat shock protein 70 A2 OS=Anopheles albimanus OX=7167 GN=HSP70A2 PE=3 SV=1
P41827	Heat shock protein 70 B2 OS=Anopheles albimanus OX=7167 GN=HSP70B2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000441 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00012 all species →	HSP70	Hsp70 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR018181 all species →	Conserved_site	Heat shock protein 70, conserved site	Interproscan
IPR013126 all species →	Family	Heat shock protein 70 family	Interproscan
IPR029048 all species →	Homologous_superfamily	Heat shock protein 70kD, C-terminal domain superfamily	Interproscan
IPR029047 all species →	Homologous_superfamily	Heat shock protein 70kD, peptide-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19375 all species →	HEAT SHOCK PROTEIN 70KDA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03283	HSPA1_6_8; heat shock 70kDa protein 1/6/8	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074613554.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

84TPM > 0

2Conditions

166.7Max TPM

60.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	46	55.27	166.70
all_coral_tissue · baseline	38	38	66.90	142.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	166.70
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	157.41
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	124.42
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	107.31
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	92.83
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	89.55
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	81.63
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	80.19
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	78.46
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	76.51
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	75.25
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	69.78
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	64.89
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	61.73
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	61.41
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	60.21
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	60.04
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	59.13
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	55.62
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	53.67
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	52.01
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	51.55
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	50.74
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	48.67
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	47.02
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	46.02
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	44.36
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	43.86
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	43.43
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	40.52
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	35.47
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	35.20
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	34.60
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	32.99
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	30.59
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	28.17
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	27.65
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	26.42
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	25.03
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	23.73
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	23.34
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.23
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.23
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.81
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.34
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.65
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	142.81
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	126.81
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	112.96
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	112.22
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	108.82
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	104.70
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	103.58
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	87.81
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	87.01
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	85.16
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	83.95
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	79.33
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	78.89
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	77.01
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	71.52
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	68.90
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	68.51
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	66.45
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	64.32
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	61.98
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	61.29
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	58.57
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	55.02
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	52.59
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	48.73
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	47.62
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	47.33
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	44.29
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	41.62
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	37.89
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	37.53
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	34.27
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	33.81
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	32.68
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	32.46
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	28.79
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	27.91
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	27.06

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.