Detailed information of XP_074613643.1 in Acropora palmata

Genomic Location: NC_133882.1:12212497...12237067
NR annotation: XP_015753906.1, PREDICTED: telomere repeats-binding bouquet formation protein 2-like isoform X3 [Acropora digitifera]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008300 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15101
all species →		TERB2Telomere-associated protein TERB2FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR028065
all species →		FamilyTelomere repeats-binding bouquet formation protein 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR35345
all species →		TELOMERE REPEATS-BINDING BOUQUET FORMATION PROTEIN 2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005637
all species →		Cellular Componentnuclear inner membraneInterproscan
GO:0007129
all species →		Biological Processhomologous chromosome pairing at meiosisInterproscan
GO:0070197
all species →		Biological Processmeiotic attachment of telomere to nuclear envelopeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for XP_074613643.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074613643.1 across 84 RNA-seq samples of Acropora palmata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
0TPM > 0
2Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 0 0.00 0.00
all_coral_tissue · baseline 38 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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