Gene detail

Detailed information of XP_074613675.1 in Acropora palmata

Genomic Location: NC_133882.1:27732686...27761808
NR annotation: XP_044177151.1, large proline-rich protein BAG6-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074613675.1

ATGAAGATATCTGTGAAGACTCTTGATTCGCAGACAAAGAACTTCACTGTTTCTGATGCGATCAAAGTGAAGGAATTCAAGGAATACATCGCTTCTGAAGTAAACATCCCTGCTGATAAGCAGAGACTCATTTTTCGAGGAAAAGTCTTGCAGGATGACAAGTTGCTCTCGGAATATGGAGCAAATGGTTGTGTGATTCATCTTGTTGAAAGAAAGCCTCAAACTGGTGGTGGCAGTTCTCAAGATGGGCCGGGCAGTAGTTCTTCATCCTCTACTGGACATTCTCATGATGGTAGCTTGGGACCTAATATTGTTATGGGAGCTTTCTCTATGCCTGTCGATGTGGTTGGAGCAACTCAGCAAATTGTTCAAAGTTTGGTGAATCAGCTTGGAGTGGACTCTGCACAGGCTAACATCAGCACTTCATCATCTGATGATGGTTCCTCTGTCAATGTCCATATCAATCTTCAAGCCACAACCCAGCCTGGAAATGATGTTTCTCAGAGGATAAATAGGGCCAGGCATTTCTTGAGAGCTGCATCTAGTGCCCTAAACAGGACTGAGGGTGAGCTCCCCATGGATACATCAGAACCTGCTGATGGTCAAAATGGAAGTCAAGCTGGCAGTAACTCTTCTGAAGGGAACACAGCAGCTCACTCAAGCCCAGAAGCTCTGGCACAGATTTTAAGAGAAACAGGAGAATCAATGGCATCTATGCAAACAGCCTTAAACCGTTATGTTGCTCTCCTTCAAGCAAACACCCCTGAGAGTTTGAGGCCCTCTGAGGAGAGCTTGCCAGATCGAGTGGCTGAAGCTTTACACAGTCTGAGCCATGCTTACCATGCCCTGTCAGATATAACTTTCAATTTCCACGGATCAGAGCCCAGAAGGCCAAGCGTGCTAGCATCTTTGTCTCCACACGTGGCCCAAGTACCTATGCTGTCCAGCATTGTGGGCGCATCCAATTTAGCTCCTAATTCAGTGGCCCCAGCAACAGCGACACAGAACACCCAGTCCACATCTGCAACAACTCAGCAGCCACAGGGAAGTAATCAGAACTTCAGAATTCAAGTCAATCCTCAAGGTGGAATATCTCTGACCACGATCATGTCCAATGCGTTGCAGCCAGGCTCGGCAGCAACAGCCAGCACCCAGCTGACTTCCACTAGTGGCACAAGAATGAGCACTGGAACAGACAGCGGTGGGGCTGGAAGAGAGAATTCGTCCAACGCATCTGGCGAACAGCGGCCGTCTGTACCTGTTGGATCGAGTGGAAATGGTAACGCCAGCAGCACGAGCACGAGCTCGAGCACAAGTAGTTCCTCAACGCAGACTGGACAAGCTGGCGTGAGGACTCGTATTATTGTGGATGACTTCATTGCTCTGATTTCCAATGTTCCTGCATCAGCTGCCGCTGTGGCTGGAGCGACTGCCGCGACAGCATCAGCTGCTCAGGCTCATTTGCCAGGCTTAGCGCAAGCAGCAACTTCCGGTGTGCCCCACATGATGGGAATTGGGTTGTCGGCGACAGGCACCAGCCCTAACCAGAACCCTGCACCGCCACCATCAGTTTCGTCAGCATCTGGTGTTCCGAATGCAACACCAGGGCAGGGTCAAGCAATGCCTCCAGGGATTGCGGGTGGCATTGCCATGAATCTGGTGTCTGGTCTGGGGACAGCGCCCCCAAATCACCCCGACGCTTCCTTGCCTTGTCAGTCATTTCATTTTGGACCACCGTCGCGGCGCCCTAGCTCTGGCTCTGCGCCTCAGCAAACAAGCCAGCCATCTTCTACTACTGCCATAGCTACAACGAGTGCTCAATCCCGACCCCCAAGAGCGACCACCACGTCAGCAACCGCAACAACAACAACACCAAGTGCGACTCGGCCGAGCCCCCCCGTCAGCCGATCGCAACCACCAAGGGAGCAGCCGAGACCGCAACCAGAACGGAGGTCCAGAGCTCGTGATCGCACGATCTCACCTGCTGATTTGCAAGGGATTTTAGGAATGATGGCCCATGATCACCGCACTGGTTTTAGAGGGTTCCCTTCCTTACCTGGTGGTTTGTTTGGCTCACGAGGAAGCAGCCGATTCGGTAGACGACAGGCCCGTGGCTCAGATGGACAAAGGGCTGCTCTAGACGTCTTGGAGAGGATCGCTTTAGATGTGCGCAGGCAAAGTAGAGATCAGTCACAAAGAGTCAACGCTATTATCCGGGCGTTCAGGTCGAACGGGATAGAAATCCGAGATGAAGGACTGCTTCCAGCTCTCTTTAGGCGCCTTAGTGATGTTCTAACGGTTGACGATTTGATGGCTGTGGTCCTAGGCTCAGAGGATCCGTATGACAAAATGTGTCCGGCACTGGTGGCGTTTGTGAACGAGGATTTGTTGCACGGAAATCCAGAAGAAAATATCAGCGGGGCTGTAGCACGGCTCTGTGAAGAGTTGGTCGAAGGTGTCGCGGAGGCTATTCGAAGTGTCCCCACTAAGGACGACATCGATGTCGTTACTTCGTCCCAAAAATTCCTGGAACACAATGTCAGAACTGCTGTAGATTTAGTCCAAAGTTCAGATGAGAATCCTAGGTTTGCCGAGTATTTCCATGGACACATTAAGGAAATCGCACTTGAATTTTTCACCTTGTTGGTGTTTTGTTATCGCGATGGTTTTGAAGGTCTCGAGCAAGTAGTGAGGAGAAAAGTGCTCCGAGCAAGGATAACGCAAGAAATGGACGAAAACACCCGGGAAATCTTTGTGCAACTGCTTCTTAGAAATATTCGCCAGATGTATTACAGTAGAGCGTACTGTTATCCGCGTCTAGAACGCTTTATGGTTCACGCTCCACCACCCCCTCCCCCTAGTGAGGAGCAACCTCCCTCCAAGGAAACTGTCAATGCTCCACCCGAGGCTGGTGCGGTAAGGGAGGCTATTGAGGAAGAAATGGACAGTCATGGTTCCGATGACTCGGAAACGTTTGCCACTCCCCCCGGATCTATGACAGCGGAGGGTGAATCCGATAGGCTTGAACTTGAGCGGGAGGTAGAGGATGCTGTTGGAGAGGATAAGGGGGGTGACGAGTGGAAATCTATCATGCCCGAGGAGTGGATCCCTGTTATTGCAACTGATATTGTGCGACAGAGAAGAGTGCCTCCACAGGCACCCCTCAGTGATGCCTACATGAACGGTCGGCCACCCAAGAGGCGTAAGATCGTGGATCAATCATCCACTGAGACTAGCATTAGTGATGCGCTGATGCAAGCAGTAACAGCCAGCGGTGTGACCCCACTCACCAGCATGGAGGATCTGTCCAAGGCCGCGAGAGACAACAAAACTTTGCAGGGCGCCTACCGCAACGAGGTCAAGACAGAAGTGAAGACGAGGCTGAAAAATGACAAAGATTACCGAGGGGAGAGATTTCCCAATACAAGGGACTATTTTGACCAGGACACTCCGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4IH17	Large proline-rich protein bag6 OS=Xenopus tropicalis OX=8364 GN=Bag6 PE=2 SV=1
Q9YHD3	Large proline-rich protein bag6-A OS=Xenopus laevis OX=8355 GN=Bag6-a PE=2 SV=1
A3KPW9	Large proline-rich protein BAG6 OS=Danio rerio OX=7955 GN=Bag6 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004983 (this species only)
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12057 all species →	BAG6	BCL2-associated athanogene 6	Domain	Interproscan
PF20960 all species →	Bag6_BAGS	Bag6, BAG-similar domain	Domain	Interproscan
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR021925 all species →	Domain	Large proline-rich protein BAG6	Interproscan
IPR019954 all species →	Conserved_site	Ubiquitin conserved site	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR048926 all species →	Domain	Bag6, BAG-similar domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15204 all species →	LARGE PROLINE-RICH PROTEIN BAG6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0031593 all species →	Molecular Function	polyubiquitin modification-dependent protein binding	Interproscan
GO:0051787 all species →	Molecular Function	misfolded protein binding	Interproscan
GO:0071818 all species →	Cellular Component	BAT3 complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23390	BAG6; large proline-rich protein BAG6	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074613675.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

81TPM > 0

2Conditions

145.8Max TPM

84.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	45	79.39	144.25
all_coral_tissue · baseline	38	36	89.83	145.78

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	144.25
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	138.65
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	127.23
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	119.78
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	119.30
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	118.82
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	117.64
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	113.50
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	106.23
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	105.50
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	105.31
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	102.46
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	100.35
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	95.93
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	95.70
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	94.24
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	93.38
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	91.38
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	89.69
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	89.07
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	88.74
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	88.67
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	87.62
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	87.52
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	81.77
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	72.65
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	63.34
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	61.39
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	60.59
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	59.95
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	59.54
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	57.52
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	55.72
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	54.67
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	53.28
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	52.96
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	52.48
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	50.15
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	48.72
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	48.61
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	48.40
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	46.48
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	39.31
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	38.61
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.98
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	145.78
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	139.28
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	137.03
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	131.09
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	127.39
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	125.59
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	122.08
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	120.46
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	117.76
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	117.67
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	116.28
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	116.28
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	115.18
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	114.50
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	112.99
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	109.02
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	106.37
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	104.72
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	102.05
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	101.63
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	99.62
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	97.92
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	95.30
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	89.30
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	76.15
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	64.35
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	63.88
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	55.53
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	54.34
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	53.26
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	50.48
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	49.88
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	47.47
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	46.39
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	45.96
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	40.44
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.