Gene detail

Detailed information of XP_074613807.1 in Acropora palmata

Genomic Location: NC_133883.1:18400968...18403173
NR annotation: KXJ07604.1, Retrovirus-related Pol polyprotein from transposon 17.6 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_074613807.1

ATGGACAAATTTACGGTTCCTTCGATGGACCGGTTGACCCCAGGTGATATCCACAAGCGATTCAAGATTTTCAGGCAAAAGTGCTCGCTCATTTTCGACGGGCCTCTCTTACACAGACCAGAAGGTCAAAAGGCCAGACTACTCTTGCTATGTGCCGGCGACAAAGGATTAGAGATCTATAATACAGCGACATGGAACGACGAAGCGAATCAATTCAAGCTTGGTCCAATATTCGAGAGGCTAGAAGCATACACAAAGCCCCAGAGCAACCAAATTCTATCTAGGTACCAGCTAAGATGCCTTAAACAGGACGACATCCCCTTGGAAGAATTTTTAACCAAGGCCCGTACGCTTATCGACGACAGTGGGTATGACCCTGCATTCCAAGAGGAAACCCTCCGCGACACGTTAGTTTTTGGCCTGAAGTCAGATAAAGTCAGAAAAGATACCATCTCCAAAGGCAATGCTCTTACCTTTCAGCAATTTTACGACCTAGCGAAAACAGAGGAGAGCACCAGGGCACAAATGCAAGTTATTACGCAAGGGGAGCAAAACACTGAATTGTATTCCATAAGAAGCAAAAAGAAGGCAATTTCATTTGAAGGCTCAAGGCAAGCAGGCAGTTCAAAACACAGTCGCTCGAACAATGAATTTAAGCACCGTAGTCCATCTACCAGCAAGCCAAGGTTGAAATTCAAATTCACTGGTTGTTTCAGATGCGGAAATAAACACAGCAGTATTGCAAGATGCCCGGCTACGCATGCTAAGTGCTCGTACTGCAAGAAAACAGGGCACTTCCAAAAGGTATGCATAAAGAAACGTCTCAAACAAGTGCATGAAATCGTACAGAGTCCACAGTACCAGGGCCAGGAGATCCACTTATACGACCACGAGGAAGAAACCAGTGACTCGTCAAGCACAAGCAGCTCTGATGAAGACGAAGGAAGTGATCCCGAACCAATAGCGGTAGTTTTAGATACCATTACCTCTGAGAATTCTGTTAACAGCATGAACAGTTACCCTAACAAGATTTACACTACTGTCAAGATCAACGACCAGTGTAGTATTCAAATGAAGGTAGATACGGGAGCAGACACCTGTATCCTTACTATCGAGGATTTGCAGAGGTTAGGACTCTCGGTCGAGATCAAGCCGTGTAGCAGCATACTGAACGGTTATGGAGGAAACTCCATACAAAACCTGGGCACTACAAACCTTCAGGTGACTTTCAAGGATACCTCTATACTCACAGAGTTCACCACTGTGGAGGCCCCGGGTCATCCCTCAATAATCGGTTGCCGACAGGCTCAAGAACTTGGCATCATAACTATCCATGTTGAGGAAGTCTCTAGCAATTCAGCGTCACCCAAAGCACAGCAACCTGTTAAACGTGTTGAGACACCTGATGGGAAGGAGAACGTTCGGCTTTGCTTAGAACCCAAGGATTTGAATAAGACCATCCGCCGCGAACACTATTTCAGCAGAACTATCGACGAGATCCTGCCATTGCTTCATGGCAAGAGGTACTTCTCAGTAGTTGACACTGCGAAGGGCTACTGGCATGTCGAGCTCGATCAGGAATCTAGCCTTTTGTGCACCTTTAACACGCCGTTTGGGCGATACAGGTTTAAGCGTCTACCATTTGGCATTGTTGTTTCTCAGGATATCTTCCAGCGAAAGTTAGGCGACATCTACAAGAACATTCCCAACGTTACCGGGGTAGCCGACGACATCATTGTCCTTGGCTCGACAGAGGAAGAGCACGACCAAGAATTCGTGAACATGCTAGAAGCCACCAGGGCGAACAATGTGAGTCTGAACTCTACAAAACTGCAGTTTAAACAAGATACTGTCGATTTCTTCGGTCACACACTGACACGGGACGGTATTTGCCCCGCAGCTGACAAGTTGAAAGCCCTCAAGTCTATCTCTGCACCATCTAATACTAAGGAACTTCTGTCCCTACTGGGATTGATCACCTACCTTAACAGATTCTCACCCAAGATTGCGGAGCTTACCGCATTTGGCAAAAATGCTTACCGATTTGGCAAAAAAGAACGTTCACTTTAG

Transcript

Protein

Uniprot

Uniprot term	Description
P10394	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13975	gag-asp_proteas	gag-polyprotein putative aspartyl protease	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR001995	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan