Gene detail

Detailed information of XP_074614136.1 in Acropora palmata

Genomic Location: NC_133883.1:8629697...8648619
NR annotation: XP_029197916.2, transportin-3-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074614136.1

ATGAACAAACCATCAGTGGACCAGGTCAGAGCGGTAATAAACGATCTGTACGTGAATCCAAGTGGAAAAGAGAAGGCCTCACTATGGCTTCACGAGCTCCAGCGGTCGGTATATGCATGGGAAATTGCGGACCAGCTGTTAAGATTAAATGTGAATGTGGAAACAAGTTACTTTGCGGCACAGACCATGCGGACAAAGGTTCAATATTACTTCCATGAACTGCAACAATCTCAATACCAGTCATTGAGAGATTCTCTGTTAGATCATCTCTTCACTCTTCGTAATGCTTCTCATGCAATTGTCACACAGTTGTGCCTCACGCTTGCTGATCTTGCTGTCCAAATGCCGCAATGGAAGGAAGTAGTCAGTGAGCTATCTCAGAGACTTAGCACAACAGTTGAAACACTACCCATTATATTAGAGATTCTGACTGTTCTTCCTGAGGAGGTTGGAAGCCATCATCTCAGAGTTGGCGCTAACAGAAGAGAGGAAGTAGTTACTGAACTGCGGGCATCTGCTGGCATTGTCCTCAATCTTCTGGCTGCCTGTGTAGACAAATTTTCAGATGATGGAACTGTGAAAGCTAAGATGTTTCGCTGTGCTGGCAGCTGGGTAACTCTAGGTGCTTTTCCTCCAGCTGAATTTGTTCAAAGTAAGCTACTCCAGGCAACATTCAAAACTTTGCATGAGGCCGATTGCAATGACTTGTTGCATGAAGTGGCTGCAGACTTTGTTTGTAATGCCCTATATACATCTGAGAACCTTGATAAGCAACAATTGTTGGCTGAGGGATTGTTCAAATATGTTATGATGCTGCCTCCAGCTTATGAAAAGGCCGTCAACAGTGAGGACATCGACAGAGCCCTCAACTTGTGTAGGATTTTCACAGAGCTGGGGGAATCGTTTTTACATGTTCTTGTTAACTCTCCAGGAAAAGATCTTGGGGATTTAAGAACACTCACCATTATCCTGACCTGTGTGAAGCATTATCAATATGAGGTGGCAGAGGTGACCTTCAATTTTTGGTATCGTTTGTCAGAAGCTTTGTACAAGACAGAGAATGATGATAAAATAGCTCTTTTCAGACCATATTTTGAAACTCTTATTGAAGCACTGTGTGTTCACTGTCGATTGGAAGCTGATGCTCAAGGGATTCCAGACGACTCAGACGAATTTGGCGAGTTCCGTATCAGAGTAGCAGATCTTATCAAGGATTGTGTGTTTGTCGTAGGATCAGAAAACTGTTTTAGTCAGATGTACAAAAGCTTAATTCAACAAGGGAACGATAATCCTTGGGAGACATCAGAGGCAATATTGTTTGTCATGTCAACCGTTGCAAGGAATGTTTCACTCGATTCCAAAGTGGTTGGTCAGTTTCTTCCTGTAATGCTAAGCCTTCCATCAAGCTGTCATATTGCTGTTCGGCACAGTAGCATTAAACTTGTTGGTGAACTGGCAGAGTGGATCGATAAGCAACCACAATACCTTGATCCCGTACTTCAGTTTTTATTGTCTAACATTCAAGACTCAAAGCTGTCCTCAGTTTCAGCATCAGCGATTGAAAGTCTCTGTATGTCGTGTTACCTGCAGATGACAAAGTATTTTGACGTTTTGGCGCAGATCGTGGTTGCGGCAGATTCTTTATCCATATCTAACGACTCTTACATTGGATTCCTTAAAGGGATTTGTAAAGTATTAGAGGGCCTTAGCTCTGACAAAGTACCTGAAGGCTTACAAGCAGTATGTGGAATTCATATCGCGTCACTGAAACAGATTCTATCAGCACCAGCCAATTCTTATCCAGACCCCACTCTCTGGTTAGACCGGTTAGCAGCAACATTTAGATACTGGAATCCTCAAGTAGGAAATGGAACTGTTCACCCCGCTCTTGCTGTTATTGGGGAGGTTTGGCCATTGCTCTCCAGCATATGTGATAAATATCGGGCGGACCTGAAGATTATTGAAAGGTGTTGCAGGTGTATTAGATTTGCTATTCGCTGTCTGGGCAAATCAGCGATTAACTTGCTCTCGCCGCTGGTGTCTCAGATGGTTAATGTGTACGGTACCAATCCCCACTCCTGCTTCCTATACCTGGGCAGTATATTAGTGGATGAGTATGGTGACGAGAGTGGATGCGTACCTGGACTAATCACCATGACAATGGCTCTTTCTGGTCCGGCATTTCAGTTGTTAAGTCAAGAAAGAGGAATGATTGAGCACCCTGACACGATTGATGATCTGTTTAGGCTTTGCAGCAGATGTCTTCAAAAGTTTCCTGTGGCATTTCTCAAGTGTGAAGTTTCTATTGCGGCGATACACTGCGCTGTTGTTGCCAGTACACTGGAGCACAGAGACGCCAACCTTTCTGTGATGAAGTTCCTCAAATTCCTTGTCAGTTGTGCAACAGAAGAGACCCAAGATAACATACAGGAGAGACTCACATTAGTGCAGCACGTACTCTCTGTCAATGGGCAAAATATAATCAATGGTCTTATCCAGGCATGCGCAGGTGCGATTCCCACATATATGGTGCTGGATGTGGCTGAAGTGCTGTGGGAATTCATCTCATTTTGCAGAGAGGAGACTTCCAAATGGGTGAAGGTTTCGCTGCAGTCCATTCAGACCCAGATTGGTTCGGGTAATGTAATAGCCACTCCTCAACAACTTCAAGAATTCCACGAGGCTCTTCTAGGGTCGTCAAACCAAGATGCTATTTGGAAAGCTTCAAAACGCTTTTCTCGCCTATTCAGATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P2B1	Transportin-3 OS=Mus musculus OX=10090 GN=Tnpo3 PE=1 SV=1
Q9Y5L0	Transportin-3 OS=Homo sapiens OX=9606 GN=TNPO3 PE=1 SV=3
Q9USZ2	Uncharacterized protein C11G11.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC11G11.07 PE=4 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005979 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03810 all species →	IBN_N	Importin-beta N-terminal domain	Repeat	Interproscan
PF08389 all species →	Xpo1	Exportin 1-like protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR001494 all species →	Domain	Importin-beta, N-terminal domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR051345 all species →	Family	Importin beta-like nuclear transport receptors	Interproscan
IPR013598 all species →	Domain	Exportin-1/Importin-beta-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12363 all species →	TRANSPORTIN 3 AND IMPORTIN 13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15436	TRPO3, MTR10; transportin-3	-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074614136.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

66TPM > 0

2Conditions

31.6Max TPM

15.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	34	13.18	30.68
all_coral_tissue · baseline	38	32	19.28	31.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	30.68
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	28.73
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	28.08
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	27.68
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	26.66
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	25.70
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.29
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	23.70
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	23.57
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	23.46
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.83
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.52
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.35
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.29
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	21.66
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.78
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.76
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.33
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.00
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.58
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.41
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.33
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.75
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.84
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.41
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.23
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.87
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.74
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.31
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.75
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.91
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.94
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.56
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.35
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	31.65
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	31.34
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	30.92
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	29.79
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	29.64
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	28.39
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	28.33
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	27.18
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	27.02
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	26.41
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	26.26
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	25.79
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	25.71
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	25.13
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	24.91
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	24.83
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	24.66
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	24.33
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	24.28
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	24.20
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	22.88
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	22.76
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.49
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.13
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.71
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.50
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.16
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.05
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.23
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.54
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.15
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.35
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.