Gene detail

Detailed information of XP_074614661.1 in Acropora palmata

Genomic Location: NC_133883.1:6950078...6971277
NR annotation: XP_044172318.1, uncharacterized protein LOC114959889 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074614661.1

ATGTTTTCTACAGGAATGAAGGCGTCTCCAGTTATTCAACTGTTGGCTGGAATTTTAGCTTTAACTATCTTTCCCTGTTTGGCAGAAGGGCAAACTCTCTTGCAGAGCGGAAAGGCGAATGTGACCAGGTCATCACAGGGTTTTCTTCACTGCAGCATCGTTCAATACCCACGGACATTTTCGAGTTCTGCAAATATACGTGTTTTGGCATCCACTGTCCATAAAGATGGGGCTACAGTCAGCGTTCACGACTCAGCAGTAGTTTGGACAGCTCAAGTGACACAATACAATTTCCGAGTCTGCGTGTTAGAATCCGGACCTGGTACAAATGGATCCTTCGTTGTCAACTGGGTTACTTTTCGCACCGCGCCCTCGGGCGTGCTCGACGGCACTGCGTCTTTTAGTACGTTCACAAGTGGAACTAAGTGTCAAAGAATTGACTTCGTACAGCATTTTCACTCTGTCCCATATGTGCTTGCTACTGTACGTTACGGAGGCAATACTGGGCCACAAGACGCCATGAACATGTGGTTAGAAGAAAAACACGGAGATCACTTTAGAATCTGTGTTCGAGAGGTGAAGACATTCGATGGAAAACATCAAAACACACAAGTGGACTGGGTCGCGTTCACACAAATGCCAGGTGAACTTACCTTCCAAGGAAAGATCCTGTTTGAAAATCGTGGGGTACCGCTTGAAATAGACAACTTCGCTTTTTGCAAGGCACTCAACTTTACGGAAGAGTTTTATGCTCCTCCTGTTGTCATGGTAACAGTCAATCACTTTTACGATAACCGGAACTTGTATTCTGTCAAGCCGGAAAATAACGCTCTTAATACTTGGATTGAGGAAATAACTATTTCTTCATTTCGCATTTGCGTCAAGGATTTAGCCGGATTGAATAGGCATCACGATCCTGTTGTTGTCGACTACGCAGTTATAGGAGATCTTGACCCGTGCATCAATGTTTCTTGCAACTACTTCGCCGTTTGTAAAGCGTTTGGCCCCTATGACGCGCGATGCATCTGCGTAGACAATTGCCCTTCTTATGAAGAGCCCGTGTGTTCTTCTAATGGAACCACATATGACAACGTATGCGTTTTCCAGCGAGAGATGTGTCACCTTCAAGCCAACTTTTCTCTTTATCATCCGGGTGATTGCACAGGGTTTCCAAACCAAAAAGGGCGCCATCGCCTGCGGCATTATCCAGTCTGGGCTGAAGCAGTCTGCGAACAAGTTCCGCTTGCACCTTATGTGTTCTATCCAGACAAACCTGTTCACATTCAGGTCTCTGTCAATCATGTGAACTTCTCGGACCCAGGCTATGTCCACGAAGCTGTGGTTGCCTGGGTTGAAGATATTCTGGACAACAATTTCACCGTTTGTGTTACTCAGGCCGGTAGGAACAAAAGGAGAAATGGCGAAACGTTTGCCACAGTTGACTGGCTGGCGTACCAGGGAGCTCCTGACGGGGGAGTATCTGGGGAAATGGACATGCCTACTTGGTGGACTGGAACGAGTTGTCGCACTGCATCGCTTCCATTGGGTAAGTTTCAGTCGCTTCCAACAGTGCTCGTGTCAGCGGAGCATGAGAGACGAAGTTTGCTTCATGATGCGTCGTCCGTGTGGTTGGAAGACATCACTACAACTTCATTTAAGATCTGCGTTAGAGAATTACAAAACTTTGATGGTGCTCACCAAAACGTCCACATTGATTGGTTAGCATTTGAAGAACTTCACAGGCCGTTGTTTAGAGAGCATGGCTCTGTTAGCTTTACAAACGGAGGAGGCCCTTCTCAAGAATTCAACTTTGCCTTTTGTGAGGATGTGCTTTTTAAGAAGCCCTACAATGACTCCCCAGAGGTCTTAGTGTCAGCAAACCATTCAACCAATGGCAGAAATCTGAATCCTTTGTACAACTCCATATCTGCATGGGTTGAGTATGTCAACCAGACCGGATTCAGGACCTGCGTCAAAGAACTTTTTGTACAACAGTACGATCCTCTGTCAATCTCTTACGCGGTTATGCCAGACGTCTGTGAACCTGGCTGGACTTTCTTCAACGGTTCTTGTTACTTCACCAGTGAACAATGCGAGACATGGACAAATGCTAATCTCATCTGTAGAGCTATGGGTGCTAGTCTGACAGCCGTCGAGAGCCAGGAAGAAAATGTATACATTCAGCACAGACATAATGGCGATAGAGCGTGGATTGGTTTGAATGACATAGCTACGGAGGGATTATTCACCTGGGTGGATGGATGTCCCTTCAGATTTCGCTATTGGGCTCTTAACCAACCAAACGACTTCAGGGGTGAGGACTGTGTGCACACTTTGGGAGTAGGGCACGGGTACATGTGGAATGATGTGGATTGTTCAATTTGTCATCAATACACGTGCAAGAAAGATTTTGATGAGTGCTCTAGTAGTCCGTGCCTGAATGGTGGTACTTGTGTTAACGGTAAAAGAACGTTCAGCTGTATTTGCCCTCCTACTCACAAAGGGAAAACGTGCGAAGAATTTGACGAGTGCTCCAGTAGTCCGTGCATGAATGGAGGAACTTGTAGGGATGGTGCAAACAATTTTACATGTTCCTGTCCTTCTCCATATTATGGGCAGAGATGCCAAGATTTTGATGACTGTCATTCTAACCCCTGTCAAAACGGAGGAACCTGCATGGATGCATTGCATAATTTTACCTGTACTTGCACGAGCGTCTATGCTGGACAGCTCTGTGAAGTGCTGGTAGGATCGTCTTGCAAGAATTTGTACAGATCGGGGAGAAGGACAAGTGGAATATACTATCTAAGTGTGTCAGGTACTACTTTTCAGGTGTACTGTGACATGACCTCAAGTGGGGGTGGCTGGACGCTCATATCACGATTCTCGAATACAGATGGTGCAAACTGGATGCAGTACAGTGGTAACTGGTGGTATGATAGGACATCATCATATGGAAGCATCACCAGTCCATCAAGCAACAGTGATATGATATCACCCGCATTCTGGCTCGTTCAAGGTAATGATATGCGAATTACTCGAAGCGATGACGTTTCTACATACGTGGAAACTTACAGAAATTGCATTGGAGGAACAAGTTTCAGACGCTTCATGGCGAGTTTCGGGAACTTTCGACGTGGTGCAGTCTGGAACTCGAATTCCTGTCGCGGAAGATGTTATGCTAGGTATGGTGGCAACATCGGTTCGGTTTCTGCATTTAGTCAGTTCCACTGTGGAAGTTACCATATTGGCGGCTATAGTCGAGTGTCATTCTGGTGTGACTGGAGCAGCGGCGATGGATCCGTTGTTATGGTCGGTGGAGGAGGTGGTAATTGCAAAAGAGCGGATCATGGGATTGGTATCACAGAGGCTAATTCTGCACGATTTGGCACAGGAAATTGTGATGGAGACTTTGGTGATGACTGTGGCTATGCAAGTGGTTATTCCCTAAACCTATGGATTAATTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28670	Aggrecan core protein OS=Oryctolagus cuniculus OX=9986 GN=ACAN PE=2 SV=2
Q28343	Aggrecan core protein OS=Canis lupus familiaris OX=9615 GN=ACAN PE=2 SV=2
P0DMV4	Intelectin OS=Oncorhynchus mykiss OX=8022 GN=itln PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000073 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00059 all species →	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF00147 all species →	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF07648 all species →	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001304 all species →	Domain	C-type lectin-like	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR002181 all species →	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR051830 all species →	Family	Neurogenic locus notch homolog	Interproscan
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR014716 all species →	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR037221 all species →	Homologous_superfamily	H-type lectin domain superfamily	Interproscan
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan
IPR018378 all species →	Conserved_site	C-type lectin, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24033 all species →	EGF-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01210	E3.2.1.58; glucan 1,3-beta-glucosidase	EC:3.2.1.58	Starch and sucrose metabolism	ko00500	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.