Detailed information of XP_074614710.1 in Acropora palmata

Genomic Location: NC_133883.1:10272871...10275289
NR annotation: XP_029200563.1, uncharacterized protein LOC114965138 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0009258 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01928
all species →		CYTHCYTH domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR033469
all species →		Homologous_superfamilyCYTH-like domain superfamilyInterproscan
IPR008173
all species →		FamilyAdenylyl cyclase CyaBInterproscan
IPR023577
all species →		DomainCYTH domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21028
all species →		SI:CH211-156B7.4Interproscan

 Gene Ontology
No Gene Ontology signature was detected for XP_074614710.1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for XP_074614710.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074614710.1 across 84 RNA-seq samples of Acropora palmata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
0TPM > 0
2Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 0 0.00 0.00
all_coral_tissue · baseline 38 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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