Gene detail

Detailed information of XP_074614749.1 in Acropora palmata

Genomic Location: NC_133883.1:17586405...17654295
NR annotation: XP_044175945.1, delta-1-pyrroline-5-carboxylate synthase-like isoform X1 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074614749.1

ATGGCAGCTTTCTTTGCATGCCCATCAGTACAGAAAATCTGCTTGCGTTTTTCATCATCCTGGTGTAGTCGTTTGCGAACTTATCCATTTCAAGACAAAACTCGGAAAAGAACTTACAGGTCATTTCAGTCCAACACTGGCACGGGAATTGCCTCTAGATCAGAGTTAAAAACAAAAGCCAGGAGAGTTGTTGTCAAACTTGGGTCAGCTGTTATCACTAGAGATGATGAGTGTGGGGTGGCTCTGGGGCGGCTTGCCTCTATCGTGGAACAAGTGTCTGAGTTACAAAATGCTGGTCGACAAATGCTTCTGGTGACAAGTGGTGCAGTTGCGTTTGGAAAGCAAAAACTAAGGCATGAAATTCTCCTTTCCCAGAGTGTACGTCAAACATTGAAACCACAAGATGTCTTGAAGTCAAGGCCCTACATCGAGCCACGAGCATGTGCTGCAGTGGGACAAGGTGGATTACTCTCTCTCTATGAGGCAATGTTTCAGCAATATGGTTTGACATGTGGGCAGGTTCTCATAACAAAGCAAGATATTCAAGACAAATTTTCACTGGACAACTTGCGATCCACAGTAGAAGAGTTAATTTCCATGAATTGCATTCCAATTATCAACGAAAATGATGTAGTTGCATCACCTCCTCAAGTTGATTTCGATTTGGCAGGGATGAGGAGAGGACTGGTGATCAGTATCAAGGACAATGACACCCTATCTGCCTTGCTGTCTGTAGAATTGAAGGCAGATTTGCTCATGATATTGTCAGATGTGCAAGGTATTTACAGTGGCCCACCTGATCAGCCAGACTCTCGTCTACTGGACACATTTAGACCATATGACATGAGCAGTATTGAATTTGGAAGCAAGTCAAGAGTAGGACGTGGAGGCATGGAGTCAAAAGTCAAGGCTGCTTCATGGGCCCTTGAAAGAGGCACCAGTGTGGTAATAGCAAATGGAACCAGTAGTGATTATGTGATTCGTCAAGTATTAGATGGACGCAAAGTGGGCACATTTTTTACTATGGTTGATGAAGCAGGACCATCTGTGGAGTACCAGGCAGCTGAAGCTCGAACAGGTGGACGAGCATTACAGGCATTGTCTTCCATTGAGAGGGGCAGAATTATTTACAAACTAGCCGACCTCTTGATAGAACGTAAGGATGAAATTCTTGATGCAAATTCCAAGGATCTTGAACAAGCGCGCTATGAAGGCTGTCTACCAGCTCCTATGATAGCCAGACTATTGATGACCCCTGCTAAACTAGAAAACCTTGCCTGTGGATTACGGCAAATTGCAGATTCTTCGCATGATATAGTGGGTCGTGTGATAAAGCGCACAAAGGTAGCTGATGGTTTACTTCTTAAGCAAGAGACAGTCCCCATTGGAGTATTGCTGGTTATTTTTGAATCACGACCAGATGCTTTGGTCCAGGTTGCAGCACTTGCCATCAGTACAGCCAATGGTCTCCTCCTGAAAGGTGGTAAGGAGGCATACCATAGTAACAAGTGCCTCCACAATCTTGTGCAAGAGGCATTGTCATTGTACGTCTCACCGGATGCTATAAATTTGGTTAGCACACGAGAAGATGTAAATGACCTTCTTCACCTCGATAATTACATAGATTTGGTAATCCCTCGTGGATCAAGTGAAATGATTCAACGCATACAGTCAATGAGTAAAGGAATTCCTGTACTTGGTCATGCCGAAGGCATATGCAGTGTTTATGTTGATAAGGATGCTGACCTTGAAATGGCTACAAAAATTGTGGTAGATTCCAAATGTGATTATCCAGCTGCTTGCAATGCAATGGAAACTCTTTTGGTGCACAGAGATCTCATCAAGACATCTTTTCTAGACCGTCTACTTAAAGCACTAAGAGAAAAGGGGGTGATTGTTCATGCTGGACCAAACCTAGTAAGGATGTTACCTCTAGCACCTGCACCAGCAAAGAGTATGAAGAGAGAATACAGTGGGTTGGAATGTGCCATAGAAGTGGTCAGAAATGTTCAGGAAGCTATTGATCATATCCATCAGTATGGTAGCTCACACACTGATGTCATTATCACTGACAATGAGTCAGTGAGAGGCAATAAAGACTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P54886	Delta-1-pyrroline-5-carboxylate synthase OS=Homo sapiens OX=9606 GN=ALDH18A1 PE=1 SV=2
Q5R4M8	Delta-1-pyrroline-5-carboxylate synthase OS=Pongo abelii OX=9601 GN=ALDH18A1 PE=2 SV=1
Q9Z110	Delta-1-pyrroline-5-carboxylate synthase OS=Mus musculus OX=10090 GN=Aldh18a1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002067 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00696 all species →	AA_kinase	Amino acid kinase family	Family	Interproscan
PF00171 all species →	Aldedh	Aldehyde dehydrogenase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001057 all species →	Family	Glutamate/acetylglutamate kinase	Interproscan
IPR036393 all species →	Homologous_superfamily	Acetylglutamate kinase-like superfamily	Interproscan
IPR005766 all species →	Family	Delta l-pyrroline-5-carboxylate synthetase	Interproscan
IPR005715 all species →	Family	Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase	Interproscan
IPR001048 all species →	Domain	Aspartate/glutamate/uridylate kinase	Interproscan
IPR000965 all species →	Domain	GPR domain	Interproscan
IPR041744 all species →	Domain	Bifunctional delta 1-pyrroline-5-carboxylate synthetase, glutamate-5-kinase domain	Interproscan
IPR020593 all species →	Conserved_site	Gamma-glutamyl phosphate reductase GPR, conserved site	Interproscan
IPR019797 all species →	Conserved_site	Glutamate 5-kinase, conserved site	Interproscan
IPR016162 all species →	Homologous_superfamily	Aldehyde dehydrogenase, N-terminal	Interproscan
IPR016161 all species →	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR016163 all species →	Homologous_superfamily	Aldehyde dehydrogenase, C-terminal	Interproscan
IPR015590 all species →	Domain	Aldehyde dehydrogenase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11063 all species →	GLUTAMATE SEMIALDEHYDE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0006561 all species →	Biological Process	proline biosynthetic process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0004350 all species →	Molecular Function	glutamate-5-semialdehyde dehydrogenase activity	Interproscan
GO:0004349 all species →	Molecular Function	glutamate 5-kinase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0016620 all species →	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074614749.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074614749.1 across 84 RNA-seq samples of Acropora palmata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

0TPM > 0

2Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	0	0.00	0.00
all_coral_tissue · baseline	38	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.