Gene detail

Detailed information of XP_074615011.1 in Acropora palmata

Genomic Location: NC_133883.1:4724500...4747027
NR annotation: XP_029194372.2, uncharacterized protein LOC114960233 isoform X1 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074615011.1

ATGCAGGGAGCTGTAAGAACCTATGCCAGCGAGGTGAATATTAAAGCCATACTCCCGGACAAAGTTGAACACAATTGCAAAGAAAGGATTGCCATTATTTTTGACCATCGCTTAAATGTGCATAAGTCCAAGGAAGCCTTTAAGGTTGAGTTTGTGGGTTCTGCCGGAAGTGCGCAAGTTTCTGCTGTTCTAGCAAATAGTTCAACATTAATATTGGAAACACCAGAATACAAAAAGGCTTGTGTTGTGACAGTTAATGTTTATCATGGAAATAACATGCTGGGCCAACACAGATTTGAGTTCACCTCTAGGAGTGACTCCCTTTACCGACTGCTTTATGGAGCCCTTGATCCGATAAGTTTCATGTGTGAAGCTCTTCAGATCTCACCACCAGAAATTCATGAACTGGACCATTCTCTCGCTGTGACCTTCCAGACTAAAGCCCCTCATGGATTTGATTTCCTTGGCCCTCAACGACAGGAAGGGACAGAAAAATCTGACTCAGAGCTTCCCACTTTGCTTCATTTTGCCTGCAAATATGGACTAACAAATCTCTGCCAAGTGCTTTTAATGTATCCTGGGGCTCATGAAGCTTGCTCATTAAAAAATTATGAAGGTCAACGGCCATACAATTTGGCAGAGAATCTTGGATTTTATGAGTTGGCAGATGAGATACGTAAATTTCAGGATAGTGGAAGTGGGTATGTCAGTATGCGTCAAGAAGACAATGACGGCGTTTATGTGAGAATGCAGAAACCTGATGGTTCTTACTGTTACATCTTAAAAAAACAAGGCGATGAGTCATCAGAGTGGTATGGTCCCGTTGATGGAGACAAGGATGAGGAGCATTATGTCAAAATGCGTCGTGACGATGGTGCATACTACTATATTGCTATGAGGGAAGGAGTGTGTGTCAAACCAACTCACATTGGCAATAAACATGAGTATGCTAATGATCCAAGCCAAGGCAGTTGCCCGATATATTCAAACACGGCCTCTGATGATAAACATGGTGATGGAGAAGAAACATATGAAGATATGACAGCTGGCAAGCAAGAAGAGATCTATGAAGATATGGTTGCTGATGATAGTTTGGCTGACAAAAAAGATAGCACAACCTCTGATGAGTTATATGAGGTCATGCAACACGGAGAGAGTGGAGGTGTTGAGCACATCTATTTTACACCAGAACAAACACCAGACAGTTTTGGCTATGTCAAGCCAACATCAAACCGACCAGCTGACCAGACCACAAAGGACTTTAATCGTTCAGCCAGTAACGCTGCTGCTATAAGAGCCAGACAACTTGGCCTTGAAAAGAAATCTCAGCTATCAATGACTGCAGGTGTAACATCTCAAGCAGACCGCAAGAACATGTTGCAGATGTTGCTCAATGAATTTGTTGAGTCTGGAGAGCTTCCAGAAAACTTTGTCACAGATGTTGGCAATAAATTACAGTTTTCACCAAGTAATCAGGAACGAACGAGATGTCCATCAATCTCTTCAAGGTCTTCCACTTCAACTATAAGCAGTGGCAGTAGTGGAATATCAATGGGCTCAGAAACTGATGGAAACTCAGAGGCATTTTTTGGTGATGCTCAAGATCATTATGGTGAAGAAGAGACTCATCAAAGTCGAAGTGACATTTTAAGTGAGCTGGGAAGTTCAACGGGAGCAGTGAGCACAAAATCTTTTACCCCTCTTTTAGTCCATAAGTCTAATCCACCTCCTCTCCCTAAACCTGACTATCACAAACCTCAAGGAAGGCAAGAAAACCCTCGCCCACTTAGGAGGGCTGCAACATCACCTGTTGAAGAAATGCAGGCCATGTTGAACTCACAAGAACAACCTGCCGCTCGGCCTCCTGTTCCGCGCAGGCATATCAGTGCACCTCTCCCAGCCATGACATCTCCAGATTGCCCATCAAAGGAATTGAGGAAAGGCGGAAAATCTCATATTCTTGAGGTTACACAAGAGGAGCATCGCGGTGTGCCAATGCAGCGTCCAGTTCCTAGAAGACCTCAACCAACGCCTTCCCCAGAAGATTCAAGGCCTCTGCCACCTGATAGGCTACCAGCTTCAGTTCGACAGGGTGGTATTTCAGTCCTTCCATCTTCCAGAGCACCAGATTCAGCGCCCCCTGTGGCCCCAAGAAGAGGGCCTATGCCTCCATCACGAGCCCCAAGGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9EQ32	Phosphoinositide 3-kinase adapter protein 1 OS=Mus musculus OX=10090 GN=Pik3ap1 PE=1 SV=1
Q6ZUJ8	Phosphoinositide 3-kinase adapter protein 1 OS=Homo sapiens OX=9606 GN=PIK3AP1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002667 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14545 all species →	DBB	Dof, BCAP, and BANK (DBB) motif,	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052446 all species →	Family	B-cell PI3K Activation and Signaling Adapters	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR017893 all species →	Domain	DBB domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16267 all species →	BANK1/PIK3AP1 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005102 all species →	Molecular Function	signaling receptor binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074615011.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074615011.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

84TPM > 0

2Conditions

149.7Max TPM

75.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	46	73.20	149.74
all_coral_tissue · baseline	38	38	79.18	135.69

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	149.74
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	116.68
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	107.64
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	104.69
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	103.32
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	102.60
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	98.86
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	98.80
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	98.72
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	94.74
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	94.52
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	90.44
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	83.79
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	83.65
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	83.49
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	83.44
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	82.64
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	82.49
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	80.79
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	78.63
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	74.05
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	72.76
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	70.93
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	70.77
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	69.14
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	68.66
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	67.80
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	67.73
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	67.54
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	62.56
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	61.85
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	60.89
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	60.16
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	51.87
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	51.71
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	48.91
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	47.37
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	47.25
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	47.06
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	46.58
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	45.87
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	44.64
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	43.66
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	41.72
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	32.87
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	23.34
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	135.69
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	124.19
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	117.85
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	105.52
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	104.21
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	96.44
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	95.93
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	95.69
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	93.47
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	92.53
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	91.76
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	90.80
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	90.33
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	90.14
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	87.51
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	87.42
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	85.50
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	84.78
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	84.22
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	83.58
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	81.07
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	77.07
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	73.79
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	73.28
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	73.09
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	70.59
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	69.67
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	65.21
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	64.00
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	63.33
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	61.50
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	61.48
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	52.98
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	45.50
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	42.35
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	38.52
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	29.02
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	28.71

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.