Gene detail

Detailed information of XP_074615098.1 in Acropora palmata

Genomic Location: NC_133882.1:4067781...4102468
NR annotation: XP_044163899.1, tetratricopeptide repeat protein 37-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074615098.1

ATGGCGACCTTGGCGAAAGAAACAAAGGCTTTGCTGAAAAATGCAAGGGAGTGCATCAAAAACAAGGAATATAAAGAAGCTCTCAAACAATGCAAGGGGGTTTTGAAGCTTGATAAAACAAATTACACTGCGCTGGTGTTCATTGGAAAATGTGCTGCAGAATTAGACCAAGCCGATCAATCTCTTATGGCATACAGGAAGGCTATTGAATCAGATGAAACACAGCCTCTTGCTTGGCAGGGCTTAGCTGCTTTGTGTGAAAAGGAAGATAACTCAAAGTTAAAATCTGAACTGTTCGAAGTTTACCCAAAATTACTACAGTTTCATAAAGGGGACAAATCCAAGTGGGTGGAAGTGGCAAGGAAACTTGCTATATTGAATGAAAATCAAGGTGACAAATTTCAGGCTGCAGCAGGCTGGGAGGAGATTGTTGCATTAACTGAGGACAAAACAGAGCAATTTAATATCTGGAGTAGAATTATACAGATCCTTGAGGTTCAATCACCTGAGAAAGAAGAAAGGAACAAAAAGTTGAAGGAGATATACAAGAAAGTTGTCACATGTGAGGGGTTGCCTGAGGAGTTAAACAACCAACTAGAAAGACACTTTGAATGTTATGTAAAACTCTTGTCAAAACTTCAGGCTTCTGAAAATCAAGAATTGCCCAAGCAGCAACCAACTGAGACTATTGATGCAGCTAAATCCATGATTCAGTTATTTCCAAGGTGTAAATTTGCTTTGGAGTTCTTAGCAAAAGACTTCCTTCTTTCCCTAGTCAATGCACCCACAATTGAGATGGCCGAATTATTCCAAAAGCTTTGTCACATGTATCCGGAGTCTGGCATTGGTGCAATCGGTCTTGGCAGTGTCATACTCCATCAGAACGAATTCATAGTTGCCAGGGAATTACTGCAGAAAGGTCTTCAGATCTTCAGTGACTGTCCCTATGGTTGGTTGTCACTTTGCAGGGCTCAAAGAAGCCTTCACAACTATCAAGCAGCAGCAAAAGCTGCAAGCAAAGGTATCAGCTGTGTATCTTGTTCATCTGCAAATGTTCGAAAAGCAGTAAAGAGGAAACTAAGCTTTTCTAGAGCTGATGCTCAGGTGAAACAAAGCCCAGAGGCAGCATTACTGGCAAGAGACGTATATGAAGAGCTACTAGAAGATGCGGATGTGCAAGAGGAAGTAGAAATTCTCACTGGCCTTGGGCAGGCATATCTTACTCTAGGGGATGTTTCTCAGGCAACACAATTTTGCTCAAAAGCCTTGGGTATTGATGCAAGCGTTGCCAGTGCTCTCGCATTACAGGGAGAAATAAGCATGCATGAAGGACTCTTTGATGATGCAGAGTTAAGGTTTTTGGAAGCGTTAGAAAAGGGTGAGGAATGCGCTTTTTACCACTTTCTCCTTGGCAAATTATACTGGAAAATGAACGGAAATCTACGAGCAGACAAGAAGAAATGCCTGGCTTCATTTCTGAAGGCCGCAAAGTTGGACCCTTATTACTCGCCATCGTTTCTTTATTTAGGACACTACTATCTCAAAGTGTTGAAGGATATGAGTAAAGCCTGTAGATGTTATCAGAAAGCGTTTGATCTTGATCCAGATTCAGACGATGCTGGAACAGCTTTAGGAGATTCTTTGACAGAACTTGGAGACGAGGTTGCGGCGCTTAACTTGTACAAGAACACAACAGCCATGTCATCCCCTGGAAAGGGGAAATGGGCGTGGCTGCGGCTTGGATTATTTCACTTGAAACACAACGAGAGCACAGAAGCAATTACTTGTTTTCAGAGTGCATTGAGAGCCGATCCTAAAGATAGACATTGCTGGGAATGTCTTGGTGAGGCATACATGAGCCGTGGAAGCTTCACAGCTGCAATGAAGGCATTCACAAAAGCCACTGAACTTGATCCATCGTCGTTATATTGCCTGTATCAGTTGGCTGCCATTAAACAACTGTTGAGCGTTCACGGAGAAGCCATCAGGGAGTACAAGCTGATTCTGGAAATGCAGCCTGACTATGTCCCAGCTCTCAAAGGCCTGGGAGAGACGTATCTAAACCAGGCACGCTCAGCCATAGAGCAAGACCTTAATGGCAAAGCAGTGGACTGCGTACTTGAGGCCATAACTGTTTTGGCACAAGCGATTAAACACAAACCTGGGCTTTCTTGTCTTTGGAAACTTCTTGGTGACTGTTGCACGATTATCCACCCAATTGCGAATGAAGCCTTCAGAGGAGGGTCCATTCCAGACAACCTTAGGAAGTTTGTTCGTGGAGAACCCGAAGAATTTGTGCAAAAACAGGATATGCTAGCTTTGGGATCAAGCGCTTATGGAAAGGCGCTGAAGCTGCAACCAGAATGTGGATCTTTGTGGGGAGATCTGGGATTCAACTGTTTTCAACAAGCTAAGCTTCTGGAGGGGAGTGACAAAGAGAAAATGGCTCACAGATCTACTCAGGCACTTAAGAAAGGTCTTTCGCTGCAGCCATCCAATCACAAATTGTGGAACACCCTTGGAGTGGTCACCGCCTCTGAAGAAGTTAACAATCCCGAACTCAGTCAGCACTGTTTTATCATGTCCATTAAAACGGAGCCCAATAATGTAATCGCTTGGACAAATCTGGGAGTTCTTTATTTGAAGCATGGAAAAATAGAGCTTGCTCACGAGGCCTTTAAAAATTCTCAAGCGCTAGATCCATCGTATGGTGCAGCTTGGACTGGACAGGCTACCATTGCTGAGATTATAGGAAGTGAAGAAGCCATGGACCTTTTTCGACACACGACAGAGCTTGGCTCTCATCGAGAGGGAAACATCGGCTATGCTCATTGGGTTTGTTCCAGCCTGCTACCGGACAAATCCCCTGAGAATCACGTGATACTGAAAGGGCATCCAGTTCCAACTCTCTCTCATCTTCATCCGGAATATCGCAAAGCTGTGCTGCAATCTTCAACTGCCCTCAGCAAATATACAGATTGCATAAGAAACGACGCAGGTGCCTACAATATGTATGGCTTGATACTGGAAAATCAGAAGTTGTTCCTGCAGGCAGAAAAAGCTTTTACGAGTGCTATAAAATTGCTTCAAGAAAGTGAGAAGGAGAGTGATCCGCAGCATTTGAATAGTGTGATTATTAATCACGCGAGAGTTCTTTGTGCACTGGGTCGCTATAAGGAATCTGCTGCTCGTTATCAAGCTGCGAAACCACTGAACGAATTCTATGATGTGTGCGGTCTTGCGCTATCATTGTTCATGGCTGGCCAATTAAAAGACAGCTTTCAAGCCTATGAACAAGCCTTTCAGCTGGCTACAACCGATGGTGACAGATCTTGTGTTCTAGCAGCACTTGGCATGCTGGGATATGCACTTAGTGACATGGATGGAGCTAAAACGATGCTTTTTAAAAGTTCACAATTACAGCCTGCTTGTCATCAAGGACTAATGGCCCTCTGTACTCTTGGACTGGTCAGCGGGGACGCTGCACTTGCTGGGGCCGCTCTCGGCGAACTGATGAGAGCAAACAATGGGAACGAAGCGCTGACTGGGCATATCTGTTATCTGTATTCTCGGTTCTACGCACTACAGGGAAATCAGAAACTTGGGCGAAGTCACATCATGAAAGCGATTCACAGCAATCCAAGTAACAGTGTATTGTGGAGTCGCTTGGCTTCCTATCTCCTGCAAGCCTGCCCTGATGAGCTGGAGGCTGCGGCTTGTTGCTCGGAATCTTCTGCAAGACTTGGAGGTAGCCACTCTGTCGAGCACAATCCCGCAATCCACCCTGCTGGTATCGTAGGCTCAGGAGCTTTACGTAACCATGACAAGGAAGCGGCCAGGATCAGTGCAACAATCAGAACTCGTGAAGGTCTTATAGCTTCCCAGAAGGCTGTGCACGCGCACCCTGATCATCTTTCAAGCTGGGCAGTTCTTGCAGCTTCGGTGACAGCCACCAGCATAGCGAGAAACCGTGAGAGACTGGAAAGAGACCGTGGCATTCTCGATACTAGGATTGCGCAGTTTGTTCAGATGAAAGCTTCCTCAGAGACTGACGCTTTGAAGCTTCGCTGTGAGAATCAGCTACCAGCGCTTGTAAACTGGCGGATCAGTCATCTGGAGTCTGCTCAATCTTGGTCCGTTATTCACCATGGCTACGGCCTGTTGTTCTCTAAAATGCTCAAGGAGGCAGCTGACCACGTTGATCAGGCTTTGACTGTGTACAGCTCTGTTCCTCATGTCTCCACTCAGCTCCATTTCTTAAAGGCGCAAGTATTATTGGCCAGCGAACAGCCCGTGGAAACTGGACTCAATATGTTGCAGGCGTCCCTGCTTTCGAGCCCAGTCCATTCGCCGAATGCCTGGCAGGTTTTAGCTGAAGTACAAGCCAATCAGGGATCAGCTACAGCAGCGGAGCTTTGTTATAGGCGGTGTCTGCAGGCAGGAATGGACGGGAAGACACAAAGCTGGCGAGTTGTTCCCCTTATACGACTGGCCCTGTTGGCTCTTCGAGTAGCACAGAAAGAGTCCCCGGATCGAGACCGCTTTCTCAACCTTGCTTTGGAAGCCTCCAGTGAGGTGGTAAAGTTGAAAACAGACTTTATCGTGGCTTATCTCATTCAGGGGATTGTTTGTTTCCTGCAAAATAATTTTGGCGAGTCAAGAAGAGTCCTTGAACGTCTTTTAGACTCAACATGGAGTGGGTTTCCTGTGGCTCAGTACTGGCTTCTCTTGCTTTATCTGGTGAAAAAGGATCTTTCTGCTGCACAGGACCTTTTGACTCAAGCAAGATTTAGAGGAAATACTCGCTTGGATTTGTTATATTACCGATTTACCAAGAATGGAGAAATTCCCGCCGAATTTAGACTGCGTACAATCGAAAAGTGCGTCCACATTAATCCGTCTGAAAGTGTGTTTTGGAATTCATTAAAGCCTACTGCTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DFB8	Tetratricopeptide repeat protein 37 OS=Xenopus laevis OX=8355 GN=ttc37 PE=2 SV=1
F8VPK0	Superkiller complex protein 3 OS=Mus musculus OX=10090 GN=Skic3 PE=3 SV=1
Q6PGP7	Superkiller complex protein 3 OS=Homo sapiens OX=9606 GN=SKIC3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002732 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13431 all species →	TPR_17	Tetratricopeptide repeat	Repeat	Interproscan
PF13432 all species →	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR039226 all species →	Family	Ski3/TTC37	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15704 all species →	SUPERKILLER 3 PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006401 all species →	Biological Process	RNA catabolic process	Interproscan
GO:0034427 all species →	Biological Process	obsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	Interproscan
GO:0055087 all species →	Cellular Component	Ski complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12600	SKI3, TTC37; superkiller protein 3	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074615098.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

60TPM > 0

2Conditions

15.9Max TPM

5.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	35	5.31	15.91
all_coral_tissue · baseline	38	25	5.73	13.07

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.91
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.44
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.25
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.21
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.98
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.56
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.40
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.81
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.80
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.52
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.51
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.31
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.20
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.56
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.04
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.87
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.29
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.26
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.97
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.91
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.82
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.58
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.16
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.87
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.85
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.77
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.53
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.51
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.51
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.50
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.73
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.69
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.49
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.44
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.07
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.07
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.25
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.66
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.38
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.78
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.41
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.27
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.10
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.95
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.90
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.64
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.61
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.53
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.31
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.08
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.71
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.56
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.37
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.41
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.81
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.66
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.23
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.85
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.71
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.65
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.