Gene detail

Detailed information of XP_074615290.1 in Acropora palmata

Genomic Location: NC_133883.1:22728904...22739497
NR annotation: XP_029195426.2, uncharacterized protein LOC114961042 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074615290.1

ATGGTAGACATTGGAGGTCTTTTCGAGTCTTCTCGCCTCCTCGACTGGGAGTTAGATTCTATAAAAACTGTCCGGAATGAAACAGTTGCGGGATCGTTAATCAACTACCGCCATCTAAAAACTGAAATACAGAGTCAATGTGTTTCGCTGAGCGCACAACAAGAGCGCATTGACGAGGAAGCCACAACGGAACCAAAGTTGAAGGTATGGATAATGCGATCTTGGGGTGCCCTTGAGACCATCGATGGTAAAACTGAAGAAGCAGAAGAATACTCACGAAGAAAACGGGAACTTGACAAAAAGATCGTGATGCTGAAGATTCAAGAGCTGTGTTTGAAACGAGTGTATGTCAGTTCCTGCATACGAAAGCTCCAGGAGCTAGCTAAAGAAGGTAGCAAGATTCCAACCCCTGTTGCTCTGCAATACAGCAAGTTTGAGGAGTGGTCGTTGGCCAATAAACAGATCTACCAGTTAAAGTCACAAATACTTGAACAAGAAGCAGCCAAAGTCAGATTGCACAAAGAGTTTTTTATCCGAGAAGGCAAGGAGTCATCCCAGTCATCTATAAAAACACGGCAGTCATTTACCTCTCATTTGGAGTTAAAACTTGGTGCAAAGGATTGTGATCCAATTACAGGTGAACTAAACCTGGAAGAAGTTGTTGTGCCAAAAAGCACAGTTCAGATTACAAGTATCCTAGACCAGATCCTAGACACAAGCTATGCCAACAATTCTTTCGAAAGCTGCAAGTTGAAAACTTACATCCGTGAATGCTGGGATGTGCAGGACATTGACGACGAGTTTCCCACTGGAGTTCATCCAGACAGATACCAAGAATTTGTGGGTGGATTGACTCAGTATATTGTGGATAAGCAGCTTTTGGTTCAGAGAGAAAGCCTGACGTATGACATTGTCCATAGCAAACTGGAACAGTACCTTATGCCAGCCATCTACAGTTTGATTCAAGATCGCATTAGCAAACCTGAGGAAGACAGCAGATTATCACAGGTTTACACAAACCTTGGGCACATTACTCAGACACAGTTTGGAATCAGTCCTGAGTTCCAAGATGATGACATAGCTCCGTATTATGCTGCAGTAGCATGTATGAAAACTATGACCCTGTCAATCTTACCCTCAAGGAAGGTTCATGCTATTGTGAGTGCAGCACAGTGTGTTTTCAGGAAGCTCAATGAACTGTGTTTAGTAGACAGTGCTAAGCCACCAGGAGCAGACGAGTTCATGGATGTTTGGGTGTATGTAATCCTCAAATCAAGAATACCAAACCTTGCGTCAACAGTGGCATTTCTGCGTCGTTACTCCAACCCCAACTTGTCATTCTCAGAGGCAGGGTATTATTTGGCAAGTGTTGAATTTGCATGCCAGTTCCTGCGACAGCTCAATGAGCACGACTACATAAACAAGTCACCATTGTTGAAACACAATATTGTGGTTTGTGAGCCATGTAGGTTTGGCAAGATGATGACAGATGAGTTGCCAATGTTTGATATGGTTCTGCAAGACGTTTGGCTTCATGGATACGAGTTGTTTGCAGTTAAGGAATGGCATTTGGATCCAACAAGGCTTTATCGCACTGTCCTTGTACCATCATCAAACAAAACCAAGCAAGTGAAAGTTGCTGTGATAAAACTCAAGACAGAAAACTTGTCACTGGCCCATATGGAGCTGCTGGAGCGTGAATTTCTCTGCACAGGAGAGAAAAATGGCCTCTTGAGCAGACATACCGAGCATGGCATGGCTGTAACACTTAATGTGGATCATGTAACAGATCCTGTTACACTGGTTTCTATACCTGATGGAAAATATGATTCTTACGAGGAACTTGTCACAAGTTTTTCCACACTTGACAAATTAATGTGCGACGACACACCCTCTTCAAGAAATTCACCAGTGGATGTCGTTGAGATGGAAAATGTCATAGAAACTTTGCAAAAGATGAATGAAACTGTAGTAGTTGCTTATGGTTTGGCTGAGTCTCCAACCAATGCAATACAGTGTCTTGTTAAAGGACTTGTTGCGGCACTCACACAGCTAGGATATTTAAGTTCACTGTTTGATACCCCAGAAATATACTCTGAACTGATTCAAATAGCTTTAGAGAAGTTCCAAACTCATTATAATAAGAACTGTGGGGTGGGCACCACCAAGTTGCCAAATAATGGACAACTTTGTCCCATCACCTGGAAGGCTTTGAAGAGGAACCTTGAAGAGGGATCAGTTAGTGAGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P54787	Vacuolar protein sorting-associated protein 9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=VPS9 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007212 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02204 all species →	VPS9	Vacuolar sorting protein 9 (VPS9) domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003123 all species →	Domain	VPS9 domain	Interproscan
IPR045046 all species →	Family	Vacuolar protein sorting-associated protein 9-like	Interproscan
IPR037191 all species →	Homologous_superfamily	VPS9 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23101 all species →	RAB GDP/GTP EXCHANGE FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030139 all species →	Cellular Component	endocytic vesicle	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074615290.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074615290.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

63TPM > 0

2Conditions

28.9Max TPM

11.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	33	9.38	28.30
all_coral_tissue · baseline	38	30	13.50	28.85

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	28.30
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	25.17
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.24
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.49
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.28
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.44
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.77
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.58
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.57
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.56
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.16
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.21
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.03
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.15
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.52
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.30
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.15
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.97
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.96
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.51
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.44
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.32
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.43
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.11
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.96
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.51
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.40
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.58
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.30
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.15
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.64
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.09
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.39
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	28.85
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	22.92
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	22.66
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	21.83
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	21.49
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.58
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.11
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.74
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.71
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.62
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.31
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.02
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.92
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.36
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.34
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.27
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.20
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.01
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.92
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.83
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.45
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.36
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.92
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.69
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.11
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.37
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.11
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.78
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.25
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.44
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.