Gene detail

Detailed information of XP_074615322.1 in Acropora palmata

Genomic Location: NC_133883.1:13071179...13093267
NR annotation: XP_029202070.1, A-agglutinin anchorage subunit-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_074615322.1

ATGAAGGAAAAGGAGAAGTCGTCCCTAGTGGATCTTGGAAAGAGGTTATTAGAGGCTGCTCGCAAAGGACAAGCAGAGGAAGTAAGCCTACTGATGGCATCTGGAGCACCCTTTACAACTGACTGGCTTGGGACTTCCCCATTACACTTGGCTGCTCAACATGGTCACGCCCAGACAGCAGAAGTGTTGTTACGAGCTGGGGTCAGTCGAGATGCTCGCACAAAGGTGGATAGAACACCATTACACATGGCTGCACAGCATGGACACACTCGTGTTGCTGAACTTCTCGTTACATCAGGAGCCAGCACAAACAATGCAGACATGCTTAATATGACTCCACTTCACTGGGCTTGTGAACACAACCACGTTGACATTGCTAAAATATTGCTCCAAGCAGGTGCCAGACATGACATCAAAAGCAAGTTTGGCAAGACTTCAATAGACATTGCACGTGCTAAAGGATATGAGGAAATTCTTGCTGTTTTAACTTCTGGGCAGGATCAAGACTTGGAATTGCCAAAGAGTTTCAAGAGGCAAGCGGATCGTAGTAACCTCTCATTGAGCTCAGTGAAAAAAAGGCAAAGAACTAAGAAGTTTGCCATGACAGAAGGTTCTTGGACTGGGCCAGAAGGACCCATAGAGAATGGTAACAAACCTCGTAAGAAAGCTGCAACGCCTGGAACATTACCAAAATCTGCTGTTGGTGGAGGACGCAGAGTGTCTGCCCCACCACAATTTAACAATGCAGGCTCCCCATCTTTACGTAGTCCCACAGAGAATTCAATTGCTTCTCTTGTATCAGCTGCTGCCATAGTGAAAGCCAAGTCAGAGAGTGAAGGAGAGAGTCAGACGTCATCTGGAAACACAGAAGGTAAAAGTGCATCCAGTACCACTAAACCTCAAGATTCAAGCGTTCTTGACACTCTTGCAACCCTTGCCACAGCAACATTGAGCCATAGTGCATCATCCACTTCAACCACACCACAACAAGTCACAGCTGTTCCTGGTAGACCTGTGGGTATTACGCCTCTCTCACTTCCTCCGACCACTCCCACATTCACAACTCCACTCACACCATCGAATCTTTTTTCTATGCCATCACCTCTTGCAGCGTTGTCTGCGCTGTCATCACTATCATCCCCAGCTCAAACTTCCCCTCTGCCGTTGTCGTTCTCAATGCCAGTGATATCAACAACGGGTGCGCAACTGGTTCCGTTGGTTCCGGCAAGTGGCTCGTCCTTCTTTTCAAATGCAACCGGGATGACAGTGCAAGCAGTGTCGGCATCTAATGCTGCTGACCCCTCATCCACAAGTGTGACCAGTTCCGGCATTAGCAGCATAACTTCAAGCCCCAATGCTTCGACGCAGACAGTGCCACCACAGACTATTGTGGCTCCTTTTCAGCTGCCAAGTGGTTCAAGTCAAGCACAACTAGCCTTGAGTCAGATCCTTACTCCAATGCAAGGGGTGCAGCCATCGGTAGTTCTCGAGTTGAATGCAACAACCAACAAAGATGGAGTTGCTCAAGTCAAAATGGATCACCAGTCATCCGAATTTTTAAAAAGCCATGTCGGTCAATCACAGGAAGCCACACACGGCCAACTTCAACAAGAATCAAATGAAAACAAACAGGATGACGCGAATTCGCAAAACATGCAGGGAACACAGGAACTGCTGATAACGCTTCAAGTTCCACCCGGTTTGCAGCACGTGCAACCACAGTTACTATCAGAGCCTACCTTTGCACTTCAACATGTTCAGCTTGTTCCCTCTGGTCAAGAGACTCAAACGCAAACATCGACTGGACAGTCACAGCAGAACCAAGTGAGTATTGTGCAACAGAATGATGCTAATACACAGGTTTCCCAAGAGCAAGCTTCAGCCTCTGGTACATCGCAGAGTTCCGTTGTTCAGCTGCAACTCCAACAGGACCAATTAAACCTAGCGCAACTCATGCAGAATGCTAGCCACGGAACTCTACCTCTGCCTTTAACAATCACTCCCCAACAGATGCAACTGTTTGCAAATACTCAGCTACAGATTCCCCAGCAGACGCGACAACAGCATCAACAACAGGCAACTACCACGGGACAATCGATGCAACACCAGCAACAGACGCAAAACATTGCCCAACAATTCATGGGTCAGTCGATCCCAAGAGGAACTATACTTCCACAGAATTACGTCTCACAAATTGGACAGACCAATGCGCAAACAACGGTGGATGTTCAACAACAGCAGTCGCAGCATCAGCAGTTAATTCCTTCTCAAGTGCTATTGCAAGTCCACGAAGACGTTCGCAAGCTGCTGGAGCAACGACAGGCAGAGGAAGACAGAGCGAGAAAGGAACTTGAAGGCAAACTGCAAGCATTGCAGAGGGACAGCGAGAAATACCGCACCGAGCTCGAAAATGCACAGAAAGAAGCTGAGGCGTACCGCGGCCGTCTGGAATTCGAACGAAAGGAGAATACAAGACTCCATCAACTGTATGAGGCGTCCAAACAGCCACCCTTAGAATAA

Transcript

Protein

Uniprot

Uniprot term	Description
P81069	GA-binding protein subunit beta-2 OS=Mus musculus OX=10090 GN=Gabpb2 PE=1 SV=2
Q0V8G2	GA-binding protein subunit beta-2 OS=Bos taurus OX=9913 GN=GABPB2 PE=2 SV=2
Q8TAK5	GA-binding protein subunit beta-2 OS=Homo sapiens OX=9606 GN=GABPB2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023	Ank	Ankyrin repeat	Repeat	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR050663	Family	Ankyrin Repeat and SOCS Box	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24193	ANKYRIN REPEAT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan