Detailed information of XP_074615349.1 in Acropora palmata

Genomic Location: NC_133883.1:22474528...22483846
NR annotation: XP_029183250.1, pleckstrin homology domain-containing family A member 1-like isoform X1 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9QXT1Dual adapter for phosphotyrosine and 3-phosphotyrosine and 3-phosphoinositide OS=Mus musculus OX=10090 GN=Dapp1 PE=1 SV=1
Q9UN19Dual adapter for phosphotyrosine and 3-phosphotyrosine and 3-phosphoinositide OS=Homo sapiens OX=9606 GN=DAPP1 PE=1 SV=1
Q86IV4PH domain-containing protein DDB_G0274775 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0274775 PE=4 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007088 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00169
all species →		PHPH domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR051707
all species →		FamilyPhosphoinositide-Interacting Signal Transduction RegulatorsInterproscan
IPR001849
all species →		DomainPleckstrin homology domainInterproscan
IPR011993
all species →		Homologous_superfamilyPH-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14336
all species →		TANDEM PH DOMAIN CONTAINING PROTEINInterproscan

 Gene Ontology
No Gene Ontology signature was recorded for XP_074615349.1 in Acropora palmata.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for XP_074615349.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074615349.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
74TPM > 0
2Conditions
158.4Max TPM
57.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 40 50.50 158.41
all_coral_tissue · baseline 38 34 66.55 108.26

Per sample · hover a bar for the full sample record

Show the sample table (84 samples)
SRA runConditionTissueDevelopmental stage TreatmentStudyTPM
SRR8800039 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 158.41
SRR8800105 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 94.70
SRR8800077 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 85.10
SRR8800071 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 83.54
SRR8800044 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 80.98
SRR8800097 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 80.55
SRR8800042 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 78.24
SRR8800100 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 78.17
SRR8800036 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 77.98
SRR8800068 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 77.55
SRR8800038 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 73.73
SRR8800083 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 72.50
SRR8800056 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 65.74
SRR8800073 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 64.04
SRR8800051 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 63.99
SRR8800079 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 63.21
SRR8800080 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 62.18
SRR8800092 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 61.57
SRR8800099 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 60.85
SRR8800065 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 54.49
SRR8800047 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 52.23
SRR8800060 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 51.21
SRR8800063 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 50.46
SRR8800093 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 48.63
SRR8800107 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 48.15
SRR8800053 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 47.02
SRR8800040 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 45.28
SRR8800034 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 45.00
SRR8800045 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 44.34
SRR8800028 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 43.31
SRR8800033 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 43.17
SRR8800091 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 39.67
SRR8800095 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 38.43
SRR8800062 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 36.44
SRR8800058 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 33.00
SRR8800089 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 29.03
SRR8800088 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 26.29
SRR8800087 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 22.44
SRR8800061 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 22.33
SRR8800026 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 19.07
SRR8800027 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 0.00
SRR8800029 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 0.00
SRR8800066 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 0.00
SRR8800075 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 0.00
SRR8800086 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 0.00
SRR8800094 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 0.00
SRR8800067 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 108.26
SRR8800098 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 106.17
SRR8800032 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 101.35
SRR8800072 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 96.81
SRR8800055 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 96.43
SRR8800106 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 94.95
SRR8800069 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 94.33
SRR8800035 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 93.99
SRR8800078 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 93.94
SRR8800096 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 93.83
SRR8800109 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 93.27
SRR8800076 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 92.84
SRR8800101 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 88.69
SRR8800043 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 86.17
SRR8800037 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 86.00
SRR8800049 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 79.82
SRR8800104 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 77.94
SRR8800074 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 76.70
SRR8800081 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 73.89
SRR8800041 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 72.35
SRR8800057 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 71.59
SRR8800048 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 69.03
SRR8800082 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 63.60
SRR8800050 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 63.23
SRR8800102 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 57.57
SRR8800108 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 54.27
SRR8800059 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 49.00
SRR8800090 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 48.45
SRR8800084 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 45.79
SRR8800031 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 44.96
SRR8800103 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 44.79
SRR8800085 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 41.76
SRR8800064 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 33.60
SRR8800070 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 33.38
SRR8800030 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 0.00
SRR8800046 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 0.00
SRR8800052 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 0.00
SRR8800054 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP