Gene detail

Detailed information of XP_074615369.1 in Acropora palmata

Genomic Location: NC_133883.1:21896931...21908034
NR annotation: XP_015754822.1, PREDICTED: uncharacterized protein LOC107334405 [Acropora digitifera]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074615369.1

ATGGATACTGGTTATAGCGGTTTGAGAAGGACGCGAAAACGTGCACATCCTAGCAAATGTCCCTGTTGCTACTCGTCCGATGAAGACGAGGAAAATAATGCAACGACTAAAAAGGAGAAAATAAAGGAAAATACTCAAGGCAATGGCAAACAAACTAATCGGAAAAAACAGAAACAAGCCAGTGACAAGGATGACCATGTTAAAGAAGTTGCAAGCAAGCCAGTTGACTCTGTTGCTGAACACAGAAAAGGTAAAAAACCTGAGAAAACTTTGTTACCTGAAAAACAAAAGAAAAGTGGAGTAAAAAGAGGTTCACCAACTTCAAAACATGACTTTGATAAAGATACTCAAGATAACAAAAATCCAGGATCATTGAACTCTAAGAAGCATAACATCAAGCCTGGACAAGCATCCTCCAAAAGTAAGAATAAACAAAAAAGCAAGGAAGACCCAGAAAATACAACAACAAGGTTGGTTGTTCATCACGCTAAGCCAAAAAAGTCTAAGAATGTTAAAACAGAATTTAAGAGTGCTAATAGAGATGAAAGCAAGATTGAAGATGAATGTCAGGATTCCAACTCAAAAAATAAGAAAAATTCTAGCATTAAGGTGTTGCCTTCCCCAAAAGTCAAAGCAAATAGGAAACAGAGCAGCCAACTCAGTGGAAAGAAAGGTTCATTTGAAAAAGGAGAGGCACTCATTGATAACAGAAATCTCAGTGCTAACAAGGATCTCAACAGCAAAAAGTTAAACAAGAGCAAAGGAAAAAGTAGCAAACCAAAAGGGATTTCCGGTAGATTGTCACCCGAGTTGAGCAGAGAGAAGGGAGAAAGTCATCCTAAAAGCCAAAAAGTTTCAAGCTCAGGTAGCAATGCTGCTGAGAAACAGAAGATAGAAGTATTTGATCATCTGTTTTCTGAACTGAAAAAGTGTCCTGGATTCAGGAAAATAACAGTTTCTTCTGGAGCTGAGATCCTTCTCAAATTGACAACTGAGATGTTGAAGGGCATCCTTCCATCGTCTAAGATGTCAAAAACAAATGCAGCGCAGATCAAAGCATATGGTGAGAAATTGCTTTCCTCCTCTTCTTCCAACAATAAAACTTCTTGTAATTTGAGTGAGTCCACAAGGATGCATACAGAGGGCGAGGAGTTGCTGCTGGCTGCATCAGATAAGAGTAGCACAAGATGTGATTTGCAAGACACAACAGTGGCTAGAAGAGGTGAAGAAGCTAAACTATCTCAGGCTGCTGAAGCATTGGTTAGCTTTCGTGCAGGCATCCCTCTCGTACCTGACAGGGAAACCAGTAATAGCAATTCAGAAATGGTTTTCAGCTCATCTCATTCCGTACCAGAGTTCATTAGGCATACTGTGGTATCCACTAAGGAAGCAGTTTCTCAAACCTTTGACAGTTTCTATGTGAATACTTCTACACAGAATAAATTTGTGGTCTCTGCACCTCAGCTCACTCCATTGCTGCAAGGAATGTTGCAGTCATCGGTGGGATTTTCCCCAAATATTGAACCAAACTTGGCTCAGGGAAGTTCATCTCAACAAGAAAAGGTGATGCCACATGAGAATTTGGCTCCTGCCTTCCCCTCTGTCCTTAGTCCTACAGCAACTGAGACAAGAACAGAGAGTCTGCCAAAACCTGTGATGAGCTCCATAATGATGAATCCCTTAGGAGCTCAGAATCTCCCGACTTTATTTTGTCAGCCCACGCAGCCTTCTAATATTCAAACATCACTTGCAGCCCAGATGCCTGTATTACCTCTTGGTAGTAGCAGCACTAATCCACAGCTGCGACCCCAGCAGCCACTGAAAGGAATGGAAGATGTCGTTAGCTGTGTTGGTTCACAAACAGTCAACAGTTTGCTGTGGAATATCAAGCCAGCACCAGTGGTGTACCTGACCAGCCCACAGATGCTTAGTGGTGTCAGAGCAAGGAACTTGATTCCACAAAGTGAAGGGCATGTGCCATTGCCTTTTAGTGTGGATGCTCCAAAGGTGCAGTCAGTTGGGCCAACCAAAACCTCTCTGACCTCAGCCAGTTCAAACATGCTTACACTCGGACGAGTGACCGTAGGGAATCAAACTGCTCCTATCAATAATGTTAATGCTTCTGGTCAGCGTCCAATACTTCCCCGGGAGCTGAGAATGCCATCTCTTTTGCCCACTATGCCTCAAGCTGCATCACAGCTTCCAGTTTCAACACTGATTGGGCCAGTTCATCATAGTTCTCCTCCAGTTCAGGTTGGTGGAATGTCTCTTCCATTTAACAGTTTAGGAGGCACTACATCTCATGGCACAGGACAGCCACTTGGCAGTACCATTGTTTCACAAGCATTGATGACACCAGCAGCGGTCACGAGTATCACGCAAAGCCCTGTCACACAAGCGCCTTTCATGCAAGTAGGGTGCAATCCCACAGGACAAGTTCCTGTTGTAAGCTCAACTGCTGTGTCTCCTGTGAGTGCAAAACAAGCGGTTAAGAGGTTTGTCCGTGAGCGAACGAAATCTGCAGAGCTGAAACAAACTAACAGTATGAACAATATAGCAACACAGGAGTCTGTAATTTCCATCAGTGGTGTTGAGATGCCAGATGCAAGTGGAGCACCTGCTCCTGTTACACAAGTGGGCCAACCTTTGGCTCCAACCCAGAAGATGGCCAACCCATCAACGGAGTTTAACTTGCAGCAAGCAGCGTCAGCACTTCTCAGTATAAGCACCCAAGATGCTTTAGAGACCACAACTATAGCGGGTGATGTGGAAGACTCCCAAGATGACCATGATGACGAGGTCACGCTAACCAAAAAGGGTGTTTTCCGTGTTGGGGATGTAGATGTGGACCCAAAGTACAACAGAATTGGAAGAGAAGGCTTTAGGTGTGGTAAGTGTGGCAAAATTTTTACTTCACTTAACTACCTGGCACGACATATCAAGCGTGTGTGCCCCGACATGAGCTGTCGTAAGTGGAAATGCAACATGTGCGAGAAGGCATTTCGTCATCCATTTGGTCTCCAGCAGCATATCTACACTCACACGGGAGAAAGACCACACAAGTGTTTGCAATGCCCCAAAGCTTTTTACAGCTCAAATGATTTAAGACGACACAGCAGGATACACTCTGGTGAACGTCCTTACCAGTGTAAACATTGTGACAAAAGTTTTGCAACAACTATATCTTTGAAAACTCACACATATATCCATACTGGAGAGAAACCTCACAAGTGTCCACACTGTCCTAAGACATTTGCAACGTCAAGTAAACTTGGGAGACACATTGTGACACATTCAGAGCAACGTCCATTTACCTGTGATCATTGCCCAAAGTCATTTAACAGATCAGGTGATTTGCGTCGACACAACATGCACGTGCACGAGTGCCATGAGAAACCATTTGATTTTGAAGACAGTGACATGCCCCCAAGTGCAGGAATTCACCTCAGTGGAGACAGCACCAAAGAGCAGGACAGTGCAATAGAGCACGTGCTTCAGTGTTTGATATGTGGTGAACAATTGAAGACATCAAGTGATTTACGAAATCATTTGCTCTCGCATGATGCTGTTCAATCCTCCACAGCAAAACAAGGAAATGCCAACCAAGCAAGGCAAACTTTGGATGAGAATGTTGAGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E9Q3T6	PR domain zinc finger protein 14 OS=Mus musculus OX=10090 GN=Prdm14 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006589 (this species only)
Transcription factor family	zf-C2H2 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF13894 all species →	zf-C2H2_4	C2H2-type zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR050331 all species →	Family	Zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16515 all species →	PR DOMAIN ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074615369.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074615369.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

55TPM > 0

2Conditions

17.8Max TPM

5.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	28	3.98	13.83
all_coral_tissue · baseline	38	27	6.92	17.83

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.83
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.77
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.16
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.36
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.51
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.33
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.91
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.84
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.47
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.21
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.06
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.69
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.48
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.04
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.55
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.04
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.50
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.56
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.48
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.26
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.96
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.92
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.92
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.67
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.56
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.52
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.33
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.95
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.83
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.32
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.19
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.86
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.21
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.95
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.77
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.67
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.22
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.73
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.35
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.25
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.18
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.01
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.38
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.30
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.23
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.67
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.53
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.47
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.39
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.38
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.41
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.19
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.90
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.66
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.94
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.