Detailed information of XP_074615394.1 in Acropora palmata

Genomic Location: NC_133882.1:20874522...20959028
NR annotation: XP_044184551.1, E3 ubiquitin-protein ligase rnf213-alpha-like isoform X1 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A0A0R4IBK5E3 ubiquitin-protein ligase rnf213-alpha OS=Danio rerio OX=7955 GN=rnf213a PE=3 SV=1
Q63HN8E3 ubiquitin-protein ligase RNF213 OS=Homo sapiens OX=9606 GN=RNF213 PE=1 SV=3
E9Q555E3 ubiquitin-protein ligase RNF213 OS=Mus musculus OX=10090 GN=Rnf213 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000242 (this species only) · gene tree & orthology
Ubiquitin familyE3|E3 activity RING|RING · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07728
all species →
AAA_5AAA domain (dynein-related subfamily)DomainInterproscan
PF13639
all species →
zf-RING_2Ring finger domainDomainInterproscan
PF20173
all species →
ZnF_RZ-typeRZ type zinc finger domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002499
all species →
RepeatMajor vault protein, N-terminalInterproscan
IPR001841
all species →
DomainZinc finger, RING-typeInterproscan
IPR031248
all species →
FamilyE3 ubiquitin-protein ligase RNF213Interproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR011704
all species →
DomainATPase, dynein-related, AAA domainInterproscan
IPR017907
all species →
Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR003593
all species →
DomainAAA+ ATPase domainInterproscan
IPR013083
all species →
Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR046439
all species →
DomainZinc finger, RZ-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22605
all species →
UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004842
all species →
Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0016887
all species →
Molecular FunctionATP hydrolysis activityInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K22754RNF213; E3 ubiquitin-protein ligase RNF213EC:2.3.2.27
Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074615394.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
81TPM > 0
2Conditions
43.7Max TPM
18.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 44 15.50 38.18
all_coral_tissue · baseline 38 37 21.48 43.71

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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