Gene detail

Detailed information of XP_074615544.1 in Acropora palmata

Genomic Location: NC_133883.1:21561602...21578615
NR annotation: XP_044170919.1, DNA-directed primase/polymerase protein-like isoform X2 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074615544.1

ATGTGCCATTGGCTTCAGACAAAACCCAATATTGTCCACCAGGAAACTCAGGATGTCTATGTATTTGCAAAGGAAAAGGATCTGCAAGGGAAGCGCATATATCTTGTCGCAACATTGCCACATTTCTGGTACAATTATACAAGAAACTGTTTGCCAGAAAATAGAAATTACTATGAGGTTATACCAGAAGGTGCTGCTTGTAGGTTGTATTTTGACTTGGAATTCAAAACAGAGTTTAATCCAGACAAGGATGGAATGAAAATGGTTGACATTTTTATAAAGTATGTCTGTTACCAACTAAAGAACATGTATGGCTTGGAGTGTGGTAGAAAGTTTATTGTGGATTTAGATTCAAGCACAGCTGCAAAGTTTTCTAGGCATCTTATATTTCATTTGCCTGGTGCAGTTTTCAAGGATAACATTCATGTTGGGACCTTTGTACGACATATTCTGGCATTGTTGCAAACAAAGCTTGAATATGGATCGGAGCAGCCAGACAGTCAACTTGCAGAAAGAGGTGGAGTTTTATGTTGCAATGATAGATCTCCTGCCTTGATCCATGAAGACAATGCTGAGAAAAGAGTTGATGGAGTTAGACTTGGAGAACTGAAAGAACTCTTTGTCAAGGATGAAAAGGGAAGCTTTGTAATTTTTTGTGATCAGGGTGTCTACACCAAGAATCGTAATTTTAGAATTTTCAAATCGACTAAGATTGGGAAAAAATCCCACCTTGTCTTTTCCAGCCAGAACATGTTCAAGCCAAGTCCAAAGGGCAGGAAAGGAAGCTTTTCAAAAGACCCAGATTACTTGTTTTTTCTGGATTCCTTGGTTTCAAATGTGAGCATGCAAGTTGATGGAAAAGATGTAAGAATCTTAACTTGTGAAAGCTGTGTAAACTCTTGTAAAACACCTTCAAAAAGAACTGCACAAGGAATAGGTAGCCAGGTTCCCACTCAAACTGGCTATGAACATTCTTCTTATCCTGATATTGACCGATTTGTTTTGAGCGTTGTCAACAGAGGTGGTGTCCAGGGAGAGATTAGAAAATGGGTCTATTTTCCTCAAGGCAAACTGCTGACGTACGACATTCTCAAGAATCAGTGGTGTGAGAATATTGGAAGACCACATAAAAGTAACCACATCATGATTGTAGTTGACATAAAGCATGGTGTTTATTACCAGAAGTGTCATGATCCTGACTGTAGGAGAATTGACTATCGCTCTCCAGAAAGACCGATTCCAGAGGATATAGATCCCTTGATGTCTTCTCAGTCCGTCGAGGACCTTTTCATATCAGATGATGTCGATGATGAGCTTTGCAAAGCTGTAGCAGAGTTTGAGGAAGGTGGCTACGGTAATGTTGACCCGCGTTCAGATGGCACTTCAACTTCGGAAAATCAAGAATGCTCAAACGAAACTAACATTAAGAAGACCTTTGAAGAAGTGGGAAAGAAAAGACGTTTAGAAATAGGCATTTTTGCTGTGGATGACGAGGAGAGCTATGAAGAATTGGCCAATATCGTGGACGATGACCCACGGGTAGAGTCTCACAGCTCAAAGATGCCGAGGGTTGTTGAAAATGGGGAAATCACGTTGGAAGCATTCGAGAAATTTTTGGACACACGGAATATTGTCACTGATGAGCATGCGCTTAATACTGGCTTTGAAGCGATGACCGAAGTTGATGTCCCACAAGAGAGCTATCTACCTGACAATGTTATCAAACCTTGTTACACGATCAACGTCACTGCAGAGGCCAAAGGAACTAGTACCGAAGCCCTTTTGGATACGCAGGACATTGTCACCAAGGAGCATTCGCATAGCACTGGAAAGGCTATTGTTGCAGTGCATTCCGGAGAAGTTAATCCCCAAGAGAGATATCAAGAAGAATTTGAACCTGTTGCCGAGGTGGATAATGTGACAGATGAAGACGCCAGCGTATGGATTGATGAGGACTCTGTTAGTGATTTGGACCTGTCGTTTGCTGCCGAAGAAGTTGAAAATAACAATTTGTGCACAAACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96LW4	DNA-directed primase/polymerase protein OS=Homo sapiens OX=9606 GN=PRIMPOL PE=1 SV=3
Q08DZ8	DNA-directed primase/polymerase protein OS=Bos taurus OX=9913 GN=PRIMPOL PE=2 SV=1
Q6P1E7	DNA-directed primase/polymerase protein OS=Mus musculus OX=10090 GN=Primpol PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004134 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03121 all species →	Herpes_UL52	Herpesviridae UL52/UL70 DNA primase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044917 all species →	Family	DNA-directed primase/polymerase protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31399 all species →	DNA-DIRECTED PRIMASE / POLYMERASE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0003896 all species →	Molecular Function	DNA primase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0006264 all species →	Biological Process	mitochondrial DNA replication	Interproscan
GO:0009411 all species →	Biological Process	response to UV	Interproscan
GO:0019985 all species →	Biological Process	translesion synthesis	Interproscan
GO:0031297 all species →	Biological Process	replication fork processing	Interproscan
GO:0042276 all species →	Biological Process	error-prone translesion synthesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22761	PRIMPOL; DNA-directed primase/polymerase protein	EC:2.7.7.102 EC:2.7.7.7	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074615544.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

56TPM > 0

2Conditions

14.4Max TPM

5.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	32	5.31	11.31
all_coral_tissue · baseline	38	24	5.99	14.36

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.31
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.88
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.58
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.55
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.35
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.81
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.55
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.39
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.30
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.81
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.57
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.45
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.15
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.29
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.17
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.14
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.00
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.94
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.93
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.84
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.80
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.78
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.71
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.61
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.53
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.28
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.00
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.56
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.24
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.92
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.99
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.63
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.36
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.77
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.81
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.91
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.81
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.76
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.16
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.14
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.91
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.81
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.78
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.56
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.55
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.51
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.48
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.31
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.47
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.40
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.12
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.41
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.16
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.98
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.77
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.69
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.