Gene detail

Detailed information of XP_074615668.1 in Acropora palmata

Genomic Location: NC_133883.1:23768039...23800646
NR annotation: XP_029188557.2, VPS10 domain-containing receptor SorCS1-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074615668.1

ATGGCGTTTTGGAGTCGGAAGTGGAATTGCCTTGTTTTGCTGTATTGTGTGGTTTCGACAATCTCGGTGTCCAGTGCGATACGCATTGATGATATCTTATATGGAAGAGTTAAACATATTCCCTTGAAAAGAACACAACCAGGTAAATTTGGTTTCCTTCGGGGAGCTGACTTGGATAAGTTTGGAAATGAACTTGCCGAGTTACACAATGACCGGGCAAAGCGAAGTGTAGAGGATACAGTACGACAGACCAACGGTTCATTGATAACAGAGTTTGAACTCAAAGGGGATAACCATTCTGTTGCGTTTTTGCATTGGGCAGGAAAGAAAAGCACGGTTATTTACATCTACACCTGTGGAAAAATAAATAATACCGAAAGTGATCACATCCTTTGTGAAGATGCATTCTTCTGGAGATCAAATGACTCTGGAAGCACATTTCAACGTGAAGAAAAGAAATTTGGAAAGCCTACTATTAACAATGTTGATTTCTGTGACAGTAACAGTGAAAAGGTTATTGTGAGTGTTCTCTCATCCAAAGTTATTTACACTTCAGTTGATGGAGGAGAAAGTTTTCAAAAGATTTTTCTGACTTTTGTACCGCATGTTATTTCATGTAATCCTGTGTCAGATCGGATGATCATTGGGCATGATACGACAGCCCAAGAGGTCCACTATTCAGTTGATGGTGGCATGAGATGGAAACTTCTGGCCAAGAATGTTGTAAATCACTACTGGGGTTATGGAAGCCAGTCTGAGGTGTTTTTGGAAGTCAAGACAGAGAATATTTATTCTTCGGTACTCAAGCATGCACTCTTAAAAGATTCAAATGAGGCCATTGTGAAACTTTTTGACAAATCACTTGGGACTTTCATGGAAAGAAGTTTTGAAATTGTTGGCAGATACATGTTTGTTCAGAAATATACGACAACCAAAGAACTGCATGTTTTTTACAAGAAAAATGCCAGCTCTTACTCAGGACAAAACTTTTTCCAACGTGCACAATTTCCTCTCAAGCAAGTAGAAGGGAAGGGGTACAAAGTTGTTGATGCCAGTGAGAATGAGGTGATGGTTGTTGTAAGGCATGGAAAAGGTTACTACAATCTGTACATTTCTGATGAGAGTGGTGTCAAGTATGCTCTCTCACGGGAGTATATTTTGGGTAATGAAACTCTGGTATGGGGCAAACGTATTACTTTGGTCGACATACACAGGGTTAGGAGTCTGAATGGAACTTATTTGGCTAACGTGATCGTTGGGCAAACATATGTGAAATCTGTGATTACGTATAACAAAGGTGGACATTGGTATCCTCTGACAGCTCCTTTGCAGGATCATACTGGTGCCTCAACACGTTGCTATCCTCCTGCTTGTTCTTTGCATCTTCACATTGTATTGAGTCATTGGTATTATTACATCCCTGGCGTGTTTTCTTCGTCATCAGCGGTGGGAATCATAATTGCACAAGGTAATTTGGGAACTAAACTGGGTGGAAGTGATATTGGTGTATTCATGTCCACGGATGGAGGCTTAACATGGACAAAAGAATTTAGCAGCTTTCACGATTTTGTGATAGCTGATCATGGTGGGATTCTTGCAGCTGTTTCTCTCTGGAGAGAGGTCAAAGATGTTTGGTATAGTTGCACAGAGGGAAGAGAATGGAAGAGAGTCCCCCTTCTTAATCAGGTCAAAGTATATGGAATGGTGACAGAGCCTGGGGAAACTAAACTCCTAGTCAATTTGTTCGGCCAGTATGTGCATGGGAATTTCCAGTGGCTCTCTGTAAAACTTAACTTCGCTACTGTGCTAAATAGGAAGTGCAGACCAGAAAACTACACTCACTGGTCTCCTAATGATGAGCGTGCTGGTGGTCAGTGTTTGTTGGGCCAGCACATTGTTTATGAGCGTCGCAAGGCAGGAGATTGCTGCTTCAATGGAGAAGAGTATGAAAGAGAAATTAATGTAACTTTTTGCACTTGTAATGCTGATGACTTCACCTGTGACTTTGGTTTCAAGCCTCTTGGGTCAGACAAAGTTTGTATTAAAACTCTATCTGCCGATCTTATTCCCGATCAGTGTCCTGAAGGAAAAACGTATGAGCATAGTGTTGGATACAGAAAAGTAGTCGGAGATCGCTGTGTTGGTGGTGCTTTGAAAGCATTTAAACCACAGACCAGATTTTGTCCAATAACATTACCAGGAGGTCTAAGCATCCAGATCAATGCACACTATTTCAGGGCTCTTGCAGCGCACAAGAGCATTTCCTTTAGCCTTAAGCAGAACAAGGGTTCGACAAAGACGACTCGATACAGTTGGGACTTTGGAGATGGTACTCCATTGGTTAACCGAACAGGCCTTAGTCACGCTAAGAAGGTGTCTCATGTATATGTGAAGAATGGTCAATATGTCGTTACAGTTACAGCTGTTAATAACGCCGGGCTCGCTTCAGTCAGTACTGCTGTTACAGTTTTGGATCCTATCACATCAGTTGAAATTGATCCACCACATGCAGTGGTTGTCGGTGAAGAGGCTTGGTTCAACGTCACATTTTACACCTCTGGAGGTCCGGACCCGGAAGAGTATAAACCGTCCTACGGTTACGTGCACTTCATGTGGATTTTTGACAATGTTTCCGAACCAGTTCTGACCCTAAACCACGCTGTTTCGCATGTGTTCTCAACAACGGGACAATTTGATGTCACTGTGCAAGCTATAAGCCTGGTTTCCTCAAAAGGCAGCCATGTCTCAATTACCGTATACGGTGACCTTACCACTGTCCGTCTAACATTTGACGTTTCCTTGAATCCCGAAAATTCAAACACAAAGGAGTGGAGAAAATGGCTAGCCCAGCGTCTGCAAGTTTTTCTGAGCTACACGCTACTGAAGATAAAGCCAAGTCGCCTTGAAGTAGTCGTGTTACCTGGAAAAGTGACCAAAGCTGACGTGTCAATAACACCGGCTCCGACAAACACAAGCAAAACACGAGATGAGATTGTTTCTCTTCTGAAGAAGAAAGTAGCTGAAGGAGTAGTGGAGATAGAATTGCTTCATGGCGGCGTGAAGGCTCGAGTCACCCACGTGGAAAAGCTACCTGGAAGAGGAAGTGAAGATTACCTCTATCCCAAAAATGGCTCAGATGAAGCAGGAAAACGAAACACGCTACTACTGATTGTAGTAAGCATTGCAGCGGCTCTGATTGTCATTTTTCTCGTGCTGACACTAATCTACTTCCTGAGGCGTTACAGCAGATTGCAGTCTCGATATACTCATTTGCGCCTGTACAGTGATGGTGCGCAGTTGAGAGACAGGGATCCTCTGGTTGAAAATGAGACAGATATGGAAGAGGAACCAAGCTTGTACCCTCAGCCGGGAGGATCACTGCGATATATTCCAGTACCCACCAGTGCAGAACCACAGACTGACTCTGATGATGAACTCATCGGCAACTTTCAGGCTGGGTCACTGGTTGTGATGCCAATTGGGCAAGACGGACAATTGCCAGACGAAAGTTCCAACACACAGAGACAAGTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UPU3	VPS10 domain-containing receptor SorCS3 OS=Homo sapiens OX=9606 GN=SORCS3 PE=1 SV=2
Q8VI51	VPS10 domain-containing receptor SorCS3 OS=Mus musculus OX=10090 GN=Sorcs3 PE=1 SV=1
Q98930	Sortilin-related receptor (Fragment) OS=Gallus gallus OX=9031 GN=SORL1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000636 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18911 all species →	PKD_4	PKD domain	Domain	Interproscan
PF15901 all species →	Sortilin_C	Sortilin, neurotensin receptor 3, C-terminal	Domain	Interproscan
PF15902 all species →	Sortilin-Vps10	Sortilin, neurotensin receptor 3,	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022409 all species →	Domain	PKD/Chitinase domain	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR000601 all species →	Domain	PKD domain	Interproscan
IPR006581 all species →	Domain	VPS10	Interproscan
IPR035986 all species →	Homologous_superfamily	PKD domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR050310 all species →	Family	VPS10-related sortilin family receptors	Interproscan
IPR031777 all species →	Domain	Sortilin, C-terminal	Interproscan
IPR031778 all species →	Domain	Sortilin, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12106 all species →	SORTILIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006892 all species →	Biological Process	post-Golgi vesicle-mediated transport	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074615668.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074615668.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

84TPM > 0

2Conditions

127.0Max TPM

60.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	46	52.27	110.88
all_coral_tissue · baseline	38	38	69.50	127.02

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	110.88
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	110.03
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	100.03
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	99.26
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	94.96
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	89.03
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	86.82
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	86.63
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	84.79
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	84.78
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	84.29
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	72.48
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	72.39
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	71.06
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	70.55
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	68.48
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	66.85
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	66.76
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	65.74
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	63.80
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	62.31
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	58.72
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	58.61
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	58.07
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	54.64
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	41.82
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	35.02
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	33.08
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	32.92
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	32.86
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	30.78
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	26.75
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	25.47
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.94
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	21.32
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.45
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.88
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.00
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.17
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.47
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.06
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.53
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.48
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.40
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.88
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.19
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	127.02
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	120.99
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	108.86
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	107.19
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	103.37
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	102.37
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	99.46
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	97.66
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	95.47
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	92.86
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	92.14
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	89.85
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	89.28
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	87.03
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	86.91
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	85.25
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	84.62
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	83.23
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	82.21
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	79.99
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	78.95
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	77.71
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	75.79
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	72.66
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	71.47
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	48.06
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	47.51
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	38.89
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	34.42
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	29.59
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	29.09
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	21.91
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	21.61
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.56
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.50
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.93
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.31
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.22

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.