Gene detail

Detailed information of XP_074615676.1 in Acropora palmata

Genomic Location: NC_133883.1:5250936...5274377
NR annotation: XP_029203769.1, uncharacterized protein LOC114967885 isoform X1 [Acropora millepora]
Species abbreviation APALM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074615676.1

ATGTTGGAACAAGCGGTTTCGTATCGCAAACCAAAGATGGAAGAGAAAGCGCTTGAAATTCAAGTTGCTGGGCCTCGCAAGGGAAAGACTCCTGCTTGGCCAGGGAACCCTTCGAAGCGACATCGCGATCGACTTAACGCCGAATTGGACAACCTCGCAAGACTGCTACCGTTCCCAGAGGAAATCGTCACGAAACTGGATAAGATTTCCATTCTTAGACTCACAGTCAGCTATTTGAGAGCCAAGAGTTTCTTTCAAGTCTCCAATGGAAGACATGGAAATGAAGAAACTTGTGAGGAACTTGTGAGAGAGGTTGAGGGAAATGGCATCTTCTCACAGCTTTCGTTAGAGGCTCTTGATGGTTTCATAGTGGTCATTACTCAAGATGGACAGTTGTTTTATGTGTCAGAAAATGTGCAGGAGTTCTTGGGGTATTCTCAGGCTGCTGTTATTCATCAGAGCGTGTTCAAGTTCTTACACATTGATGACCAGGATATGGTAAAAACTAACCTGGCATGGCCAAAGCCCGCAGAAAAGAAAGTCAAATTAAAAACTGAAGACAAACATTCCAATGTGTCTGGTCAAGATGACAGAAAAACAGATGACAGCAACAGTCTAAATCGTTCGTTTACTTGCCGTATGAAGTGCACACTGAATCATGGAGGAGGATTTTACAAGCTCTTTAGGCTATCTGGTAGACTGAGAGAAATTCACACACGCAAGCGGGACAGTCAAGTTCTGGAGTATGGTCTTTTTGCTATCTGCTCGCCAGCAAACAATTCTCATTCACACCACACTGGGGCAACTGTTAAAAAGGAAGTTGCTTTGACTGCACAAAAAAGACTGGAAAGGGCCAACAGTGAGCCCATTTGTGGCAGGAGAGCCCCTCTCCCTTTAACAGGAATGCTTCCTACAATGCCTATGAGCCATCATTATTCAGGATCTGAGACTCGCTCAACTGCCGTTAGTCCTCTGGCCTCGCCCGCTGCTTCAACAGATTCGGGACACCCATCTCCTGACTCCAGTCAGGGCGGGAAATTGTTACTGACTGACTCTGACATTCGAAGCGACAGCAGTGAGGTATCCCCACCGTCTAGCAGTAGCTCTCATGATATCGATGGAAGGCCAGCAGCTGATCATCTCATAACAGGGTTGAACCACCCTTTCATGCATGCTCATAGACTCAATCGCAAGAGAACAACCAGCTTCATGGATTCCCTCCGACCCAATGACAAAGATAATGCAAGAAAGCGGTCTCGCAGTTTAGCTGATGCCAGTGAGCTTTTCGTACGAGATGGAATGGATCCCAGGTCATTTTTCTTCAGAGGCAACTTGCCAGCAGTTCCTGAAATCAAGGTTGAGAACACAAAGAGAAAGGAGGAGTGCACACAGAGTTCTGAGGCATCAGATAGAAGGCCTCTGAATGCTCCCGATAACAGGCTTGATGCTGCTCAAGGCCTTGTCAGTCTTGGAAATATGGCATCTAAATTTCCAGCACTTTGTGCCTTTCCTCCAGATTTCATGTACCCTGATGTCATGTTTCAACGCGACATGCTTCATGACCTCCAACATCTTAGAGCCCCCTTCGACATACATAATCCTTACTGCTTGGGAAATGATCCTTACACAGCTTTGGCCATGAGGCGATGGCTGACTAACCCTGATATGTTCCATTCGCCATTGAATCCAATGTTGGCTGCCCAAGCAGGCCTCTTTTCTCCAGCTGAGAGGTTGCGCTTCCTCAAGTTCCCCTTTGCTTCTCCGGCTTATTTTCCTGGTGCCTCTCCATTTGATCTTGGTGCAATTTCAGGATTCACCGAGAGGAACTTGCCAGAGTATGCATTGAGAGGTTTCCATCGGAATGGACTGGCCAGCCCAGATATGGCCAGGAATGCTGCAGCAAAAGAAACAGACCGACAACAAACTCCACCTCGAGAGAAACAATGCCAGGTGCAAGACAACCGAGAAAGCAAGAATTCCTCCTCACCGAGTAAGACAGGAAGCCCTGATGCTGGCATCCCGATCAAGAAAGAACCAATGCCAAGCGAGAGGAAAGGCAAAGACACAAAAAAGACCAAAGAGGAGACATTTGATGGTGGAGGTAAATCGGCAAAGGTTTGTAGCACTACCACAGATGATGATGATAGGGAGGAGGAAGTGGAAGTGGAGGAGCAGGAGGAGAGAGTGGATGTTGTGGGTGGAACCAAACCAGCTTCTGGGCTGCGACAAACATTTGCAGGAATTCAAGAAGAGTTCAATAGCCGACTCGAAAATCTTAACAAGTCATTTGCTCGTTCCTTGGACCAGAATATGACCTGTCCATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q95LD9	Aryl hydrocarbon receptor OS=Delphinapterus leucas OX=9749 GN=AHR PE=2 SV=1
P30561	Aryl hydrocarbon receptor OS=Mus musculus OX=10090 GN=Ahr PE=1 SV=3
Q8R4S6	Aryl hydrocarbon receptor OS=Mus musculus castaneus OX=10091 GN=Ahr PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006413 (this species only)
Transcription factor family	bHLH · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF00989 all species →	PAS	PAS fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001067 all species →	Family	Nuclear translocator	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR013767 all species →	Domain	PAS fold	Interproscan
IPR000014 all species →	Domain	PAS domain	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR035965 all species →	Homologous_superfamily	PAS domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23043 all species →	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074615676.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.