Gene detail

Detailed information of XP_074615698.1 in Acropora palmata

Genomic Location: NC_133883.1:9243730...9264329
NR annotation: XP_029212868.2, LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 6 regulatory subunit 3-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074615698.1

ATGTTTTGGAAATTCGATTTAAGTCCTAGTTCTGCTATAGATACCATGTTAACGAGAGAGGACTGTACTTTGGGCGAAATATTGGACGAGGATGATGTGCTTCAAGAAACGAAATCTCAAAATAGGAAGCTGATCGACTTTTTTCTACGGCCAGAGATCTTGGAGGAACTAGTAGACCTAGTTTTACAACAACCAGATGAAAGCAAAGATGATTGCATGAAATATAAGCACCCAAATACAGCTTGCGAAGTGTTGACTGCTGACGTTTTTGCCATTATTGACAAACTAACAAACAATGAGGATTTATTGAATAAAATCTGGTCATTTATGGAATCTGAGCCTCCATTGAATCCCCTACTAGCAAGTTTCTTCAGTAAAGTTATGGGAGTTCTTATAAGTAGGAAGACATCTTTGATGTTAGAGTACCTTAAAAGTAAAGAAGATTTTGTAGATTTAATTGTCAAACATCTTGGAACATCAGCAGTCATGGATTTATTACTTCGATTGATAACGAGTGTTGAATCACCTCAACTTCGCCAAGATCTGCTTGAGTGGTTGAATAATCAGAAGCTCATTGAAAGTCTGGTATCTCTTATTGATCCTGAAGTTGATGATGATAGAAGCAGCAATGCTGCTCAAAGCCTATGTGATGTGATACGATTAAGTCGAGATCATATGTCTCAACTTCAAGAAAATGCTGACCAAGATCCTGTATTGGATGCAGTCCAGAGGAGAGAAACAGTATCAGAATTGTTGGATCACATGCTGCGCGATGCTCAGCTTCATCCTGATGTTGCTCTGGTTAATGGCATCTCTGTTTTGCTGACACTCCTAGAAGTCAGAAAAGGAAGTGGTGAGGGTGAGGAACCAATGACAGCCTTGGATGCAGAAAGACTTGCGCAAGGTGTTAGTGCGACATTAGCAGCGTTGACGCCCAGGCTTAAAGACTTCCATCAGCTCCTGGTTGACCCACCACCCATGAAGCCAATGTTGACAACAGTAGGAACCTTAGACCCACCCCTTGGGAATGCTCGACTTCAAGCCTCTAAGCTGATTGCTGCTATCTTGGCTACTAATAGTGATACAATAAATACTGAATTAGCAAACCTAGGCACTCTACAAGTTTTATGGGAGTTATTTTTCAAGTATTCATGGAATAATTTCCTTCATACACAAGTTGAGAAGTGTGTAACTACAGTTTTAAACAATCCTCCAACTGAGGAAGATGAGGAGCTGTCCACTCCTTTAGTTGATGTTTTGTTTAAAGATTGCCAGATCATTCAAAGAATTCTTCAAGAATGGGATGATCTTGAATTAGAGACTGGCCCTGGAAACAAGAGAAAAGGGTACATGGGCCATTTGACCAATGTTGCCAACAATGTTGTGCAAAGTGTTGAGAAAGGCAAGAACAAGACTACCCTTGAGGCCATATTCAATGACTTGCCAGAGAAAATTCGTGAAAGATGGAATTCATTTGTCTCAGGCAAGTTGACAGATGTCAACAAACAGAACATGTCAGAGCTGGTTGGTCACCATTTTCAGTCCTCCTCTGATGATGAGGACGATTTTAAACCAATACCATTCCTACATACAGAAAGCTCACTTCAACAGGCATTTTCAAGATACCAGATGCAACAGATTACATCAGAGTTTATGGACACATTTGGTCTTGATGAAGAGGAATTCCAAGATCAAGACGAATCCATTACAGGACCCTTTGACAAAATGGGTGAGGTCAGCTTTTCAATAAGTGCTCAGCAAGATAATCCAAATGAAGCATTGTTTGAAGCTTGTTGTAATGAGAAAATTCAACAGTTTGAGGACAGTGGTAGTGATGAAGAGGATATTTGGGAGGAAAAGGAGCTAACATTTTCATCAATAGTGGAGTCCAGGCAAAGGTTTGCGATCGCGTTGTCACCTCAGGAAGGGAGCGACAGTGAAAGTAGCGATAGTGAAGACGATTTAGATTCACCTGATCTCAAGGCCCCCAATACTTCCTTCCAAAGCGAGGGCAGTCCACAGAGATCGCCTGAAAAACAAACTACACTTCCCACTGCTACTGCAGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACTGCAGATAGTAAAATGGACATTGATCCAAGTGATGTATGGTCAGTGGCATTTGATTCGACCGCGGTGGCTGTAGATGAGGCAGTCTCTATGGATGCGTCAGATGTTGGCTGGGGAGATACAGTAGCAACAACAGTAGACACTGGATGGGCAACATTTGACAGCTTTACTGATATCAGAATGGCACCAACCAGTGAACAATCCGAAGAAGTGGTTGATTCACCTGTTGCAATGGAAACAGAGACTCAATCACCTTCTCCTGCCCATGCTGGAGCTGCCTACATTGTAAAACAAGTATCGAGTCCAGACAACCAAGGTGAACTAAGAACGCAAGGCCTGGTGTCGAGCGCAGAGGATCTTGGGGTCGCGCGGGATCTAGACAACGTTGAGGCAGATCTGACGGCATCGTCAACAGCTGTGGACAGAGCAGCTCTTTATAAGTGCGAGGGTCAGTCAGTTGATAGTTCAGCGCCGTTGGCAACAAATGATAGCGATGATGATATCTCAGATGATGAAAACCCTGGAGTCAGGTGTGAAGAAGTATTTTCAAGGTTAACTGAAGAAGAAGCAACACGGGAAACGGAAGGGGAAGTTCGCACAAAAAGTGAAGTACCGCCGGCTCTAAATAATGTACACGAGGACCGAATGACCACTGCAAAGGTGGACAATGGGCCAGTTGAGTTTTCCAACGATGAGACGAATCAGGGTTCGATAAAGAAAAGTAAAATGGTTCAGGAATCGCCAGGGTCACCTGTAAAGGAACTACCGGAATCCCCAGCAAGCGTTGTGAATGGTCCAGTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5F471	Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Gallus gallus OX=9031 GN=PPP6R3 PE=2 SV=1
Q5H9R7	Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Homo sapiens OX=9606 GN=PPP6R3 PE=1 SV=2
O75170	Serine/threonine-protein phosphatase 6 regulatory subunit 2 OS=Homo sapiens OX=9606 GN=PPP6R2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004058 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04499 all species →	SAPS	SIT4 phosphatase-associated protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007587 all species →	Family	SIT4 phosphatase-associated protein family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12634 all species →	SIT4 YEAST -ASSOCIATING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0019903 all species →	Molecular Function	protein phosphatase binding	Interproscan
GO:0043666 all species →	Biological Process	obsolete regulation of phosphoprotein phosphatase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0019888 all species →	Molecular Function	protein phosphatase regulator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074615698.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074615698.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

81TPM > 0

2Conditions

112.7Max TPM

56.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	44	50.14	112.69
all_coral_tissue · baseline	38	37	63.35	97.22

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	112.69
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	101.58
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	86.92
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	78.52
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	78.18
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	76.96
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	74.95
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	74.82
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	73.38
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	72.65
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	67.61
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	63.55
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	61.46
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	61.32
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	60.70
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	59.10
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	58.84
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	58.66
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	56.64
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	54.28
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	53.97
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	52.31
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	51.29
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	49.71
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	49.54
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	49.04
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	45.14
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	41.56
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	39.61
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	37.66
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	36.71
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	36.13
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	33.94
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	33.54
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	32.07
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	31.53
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	29.43
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	29.00
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	27.55
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	26.30
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	25.51
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	25.25
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.21
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.76
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	97.22
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	94.21
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	89.92
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	84.08
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	80.56
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	80.52
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	79.68
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	78.72
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	78.45
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	78.36
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	78.28
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	78.25
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	78.22
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	76.61
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	73.97
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	73.21
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	72.84
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	72.61
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	69.14
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	67.47
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	65.50
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	64.73
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	64.70
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	64.05
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	63.75
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	62.85
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	56.79
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	46.14
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	44.07
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	42.89
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	41.23
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	37.97
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	37.18
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	35.59
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	34.20
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	33.38
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	29.82
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.