Gene detail

Detailed information of XP_074615783.1 in Acropora palmata

Genomic Location: NC_133884.1:4674771...4691219
NR annotation: XP_029204963.2, leucine-rich repeat and coiled-coil domain-containing protein 1-like isoform X2 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074615783.1

ATGGCTACTGGAAAGAACACTTTCGATGTGGTTTCTCATACATTCCCGAAAGAAATCTGCCTTATAGATGCACAGATTAATAGTCTATTTGATGTTCACCTGGACTCTGGCTTGATCTCCTTAAATCTTCACTGTAATAATATTTCAGTGATCGAAAATCTCGATAAACTTAAGCACCTGAAACATCTTGATCTTTCGTCCAACCACATTGCCAAGATGCGGGGACTTGGTGGTCTGATGAGCTTAAAGACGCTTAACTTAGCCTGCAATGAACTGCAAGTTGTGGAGGGACTTGAGAATTTAAGGAACTTGGCCAAGTTGGACTTATCGTACAACAATATCAATAGTATTTCTGGCTTCAGGAAGCTCCATGGGCCTAGCTTCAGCTTATGCACTCTTTACCTCCAAGGAAACCAGTTGAGCTCCTTAGATCATGTGATTAATTCTCTTAATGGCTGCTTGTCATTGAAAGAATTAACATTGTCACAGTATGGAGAGGCAAATCCTGTTTGTGAGTTACCAGATTACAGATCAAGGCTGTTTACATCATTGAAATCAATCCAAATATTAGATGGGCTTGATCACAGTGGAAACCCAGCTGCTTCAAGAGATAGTTTGTTTATTATTCCTGAACTGGAAGACTATGTTGAGTATCTTGGATCTGAAAGCTCTGGTGACAGTAATATGAGACCTGCAAAGTTTGAAGTTGTAACTCCTAGAATTGACTCGGTGTTGGGCAGATTTCGTCAGCAAGGGAAATTGTCATCAGAAACAGATGTTGCTGGGGATGAAGAACCTTCCCATCTTCAGCACATTCCTGGCCGAGTGAGCCTGTCTGCCGATCATGAAGTCCGTTTGGAGACACTCGAACATCAGCTTACACGGCTGATCCACGACGCAGAGAAGAAACATGCTCCACAGAACGCAGGGAAAAAGGCGACTAGCTTGGAAAATGGAGATTCAGATGATTCAGAGTCAAACGAACACATTAAGAAAAGAGCGAAACGAGGCCAGCAATCACCAAAGAACAAGCGGGCGACGCGCACGGCAGCGACAAAGAAAGATACAGGCAAGAATCGAGCCAAACCCTCTCTTCACGTGACGGTGGATTCGACAAGCTCAACCTCACCAACAGATGATCAAGTGAGAAAACTTACAGTCCTAGGCAAAGCGCTGAAAGGACGCACAGTCAGAGACCCAGAAGATGATGAGAGAATCTTGTCGCTCATTCAGGAGCTGGATGCTGAGCGCGAGCGAAGATGGAAAGCTGAACAAGCCGCAAGAAAGATGGTTGATGCCATTAAAGAGCTGCAGTTGAAAGAGGCAGAAGAAAGGAAGCTTAGAGAAGCCTCCTTGGCGGCCAGCAGTCGGTTTAAACGAGTTCTGCTTCACGAGAAAGAAGCTAAGGAATCGCTACAGAAAGATTTAACTGCAGCACAGGAGCAAAATATTGAGCTTAGAGAGAAAGTGAAAAATTTAACAGAAAGTGAAGAGGAGCAACAAAGGGCTTTACGAGCCTTGGAGCAGGCATCTGTGAAGATGGAGACGGAGAAGATCAAACAACACACTGAAGCGGTCTCGCGCTTACAACAGGAGCAAATGAAAGTTGGTGCGCTAGCGAAGGAGTCAGAACTGTTAAAGCATTCAGTGAAACAACTTAAGGGTCAGGTTCATCAGCTTCAGGAACTGCTGGCAAACAGAGAGCAGGAGCATAGGAAAGCCGTGGAAGGCCTGGTACGAGTTGACAGTCAAGAGATGCGTGCGGTGGTGGATCGAGAGGTCGCTAAGCAGGAGAATGTTCACCAGCAGATCATCAAAGAATATCAGGACAGGTTAAACAAGCGAGATATTGAATATGCTGCACTTGAGGACGAATTTAGAATGGGATTGCAGATAGAGGCCAACCGTTTCAGAGAGCTGCAGGAAGCTTTTGAAAGAGTAAGCGAGCAAAGCGCTCAGCAAAAAGAAGCTTTACATGCCATTAAGCAGAAGGAAAGCAAAGCAACATCCATGGTCAATGAACTTACAGCGATGGTGAAAGAACAGCGAGGCAGAATCTCGGAGCTTTCCAGGGGAAGACAAGATATTGTTGGTGATTACAAGGAAAGAGTTCAGAGTTTAGAGAAACAGCTTAGTGAAGCCAATAAACAGCTATCAAGACTTGAAGCATTGGAACAGGACAAAGCTAAACTGACCGCACAAATACGTGCTCAAGTGTCAGTCATCGAAGGTTTGCGGAGTGAGAGAAAACTATGGAGCGAGGAGCTAGCGCAGCAAGGTGCATCTTTAGCCCAGGATCGTGGTAGATTGGAGTCGCGGGTTGAGGCACTAACGGCTGAAGTCAGTCAGCTGCAAAAGGAATGCCAGAATGCGAATGAAACGGCCAGTATCAAGTCTAAGATAATTGAAGATCAGACAGATTCTATAAAGAAACTCAGGCAGAAACTGGCCGATCAAGATTCGAACTTGGTTCAGTGCAAAGAGGAGAGCACTGCACGGGAAAGAAACCTGGAGAAGCAGCTCTCTGCTGAGACATCTGCTAATCAGGAACTACAGGACCAGATCGACGCACTTATTGATCGCAAAGAATCACTCAAAGAGGAACTTAGTAAAACCCAACAAGATCTCGAAACCTGCAAAGAAAATCACCGGGCTTTGAAGGTCAAGTGGCAGGAAAAGAGCGAACTTATCGGGAAACTGGAGAAAGAAGTTGTAAATATGCGAAACAACTTCAAAGAGAAAGAGAAAACGCTGATTGAAGAGAGAGACAAGGCGGTTAATGCGGCCGATTCCGCTGTGAAAAGGTTAAAAGAATGTGACGATACCTTTCGTCAACAACTGGAGCAGGAGAAGAAGTCGCACGAAGAACGGATTCAGACATTAAAGAACGAGAAACAGCAGCAAATTGAACTGGCCAACTCCAGGGTCTTGGAAGTGGAAGATGAAATGCGCATACTCTTACAAGAAAATGCGCTTACCAAGAAATCGTTAGAGCAACGGCTCAAGAAACTTTCGTCGGCGTTCACAGAAATACAAGATGATCTCGCTGGGTCGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NRC9	Leucine-rich repeat and coiled-coil domain-containing protein 1 OS=Xenopus laevis OX=8355 GN=lrrcc1 PE=2 SV=1
Q69ZB0	Leucine-rich repeat and coiled-coil domain-containing protein 1 OS=Mus musculus OX=10090 GN=Lrrcc1 PE=2 SV=2
Q9C099	Leucine-rich repeat and coiled-coil domain-containing protein 1 OS=Homo sapiens OX=9606 GN=LRRCC1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003961 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12799 all species →	LRR_4	Leucine Rich repeats (2 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR050576 all species →	Family	Ciliary and flagellar integrity-associated protein	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR025875 all species →	Repeat	Leucine rich repeat 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45973 all species →	PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16475	LRRCC1, CLERC; leucine-rich repeat and coiled-coil domain-containing protein 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074615783.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

54TPM > 0

2Conditions

19.8Max TPM

6.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	29	5.49	14.48
all_coral_tissue · baseline	38	25	7.69	19.79

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.48
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.32
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.84
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.64
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.77
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.22
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.07
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.95
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.81
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.64
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.42
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.67
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.47
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.96
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.26
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.81
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.52
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.22
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.01
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.67
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.60
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.46
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.33
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.84
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.62
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.55
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.01
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.34
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.84
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.79
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.36
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.15
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.03
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.93
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.69
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.23
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.06
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.01
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.74
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.57
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.26
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.08
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.75
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.71
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.64
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.15
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.29
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.16
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.30
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.25
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.19
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.73
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.13
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.08
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.