Gene detail

Detailed information of XP_074616068.1 in Acropora palmata

Genomic Location: NC_133884.1:6304202...6332657
NR annotation: XP_015755009.1, PREDICTED: uncharacterized protein LOC107334576 isoform X4 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_074616068.1

ATGTTAAGACAGGTGGCCTATCAGCAGTTCTACCTATTCTGTGTGTTGTTTGGATTCTGCAAAGCTTATGAGGAGGCTGGAGTTTCAAGCTACCTGAAGGAGAATGTTGATCACATGTCAGACACCGGCATGACTTTAGTGAATGTATGGAGTGTTTCCTCTTCTCGCCAAGGAGTGTTTCTGTCTGCTGGAGCCGGAGTAAACGCTTTTCATGACACTTTTAAAATTCCCAAGCCTGGAATCTACTTTGTTTCTTTAAACTTGATGATGACAAATGCAAGTGATGGTTTTTTGATTGCCAGTTTGATAATCAATAATGACTTTGAGGCGACCAGTGGAATCGACGGTATTTTTGGTAACACAGGGTTAAATGGATCGTTGAGCCTATCAGGTTTCCTACGCCTTTATCAAAATGATTTCCTATCCTTGTACCTGCGTGGTTCTGGCGGAACATTGTTACGTGACAGTACTTTTTCGGTTTTGTACATGTCAAACATAGGCTCTGTGCCTGGTTTTCATACTCTATTATCCCGTGACCAAATTATCCAAAATCAAGCAAAGTCTCGCATTGAGAATTGGAGAGCAAGCGGAAGCAAAGGATTATTCGTCATGCGCAGTGGAACATCGCCTTCCGTAGGGATGTTCTGTGCGATTATAGAAGGCATTCACAAGTTTACATCAAACATCAACATCCAATCCAACGGCAATCCAACGCACTATGCCCTCTCTTTTGCATTGAATTCAAATGTTACGCTACTTCGTCAATTTTCATCTAGACGGTGGAAATATTCTACAGGTGTGTCTGGAGTATTCTATTTATACCGTGGTGATTGTGTTGAGCTTCAGATTGAGTTAATAAGTGGTGGGGATCTTATTCTCAAATCCGGAAGCAGTTTCTCAGGCCTCTTTCTTGGGATCAAAAGTGCCGTCGATACGCATTTCTCAGTCACCTTGCGCAGAGGGAATATACCAGCAGGATGGAACAGGATGGAAAACTCGACAATGATAAGCTCGATACGGAATTTCAAGTCAGAAAATGCGTATTCAACGTTAAATAACGGCGTGTTCACTTGTGACAGCGAGGGATTGTTTATAGTTACTGCTGTCGTAAATGTAAATTCGACGTTTTCGTTGCCAGAAAATTATTTTGGTCTACTTGTATCTGTTGGCGGTTCCGTTCACGACAGCAACAGCAGACAGTTCATTGCTTGGACGAAATCATCAGGGGCTGATTCACTAATCGTAAGTGGCGTGGTTGAGCTTGGTAAGGGAGTCACAGTCAGTGTCTATATCTATTGCGGTGATGGTGATGGAGCAATAATAGATGGGCTTTTCAGTGTTGTCATGATTCCTCCTGATTGGCCTGGTGTTTCAGCATCACTAAAGGACACTGTAAATCTAAAATTGTCAGGATGGACGAAGTTGACACGATGGAAAACGTCAGCCGTTCCAGGTTCGTTTTCCTTTGACAACGCCTTCTCCCCAAGCGACGGAGTTTATCGCACACGTGCAGATGGTACATATTTTTTGTCCTGCAATGCAATTTTTAATGGTCAAGGAAAAGGGAACTTGTCATTAATAATAGCCATCGATGATAACCTTGATGAAGGGAATGGATTGTTTTCGCTGAACGAAAGTCCCAATGGCGATGTTACACTCAATGTTGCTGGCTCCATCAAATTGAGGAAAAACCAAAGTGTCTCCGTTTTCGTGGCATCCACCGAACCAAAGGCGTGGAACATTTCTAGCGATACCGGTTTCTCTGTGGCCTTGGTTGGGTCAGAGTGTCTTTATGTACCAGGATTATTTGCAGTGAAAAGTGATGAGGGTCTTAGCGCTAGTTCTTCATATGGAGAAATTGGTGGTTGGAAGACCATTCACATTTTTGACTCACAATTGGATGGAAACGGCACGCAATGGAACCCAACGTCAGGTCGATTTAAGGCTGACGAAGATGGCTTGTACCTTGTCACCGCAAATTTGCTAGTACGACATTCAGGTTCATCTAAAGTTATTATGAACGTATTGCTGGATGATGGTCAGAAACAGAAAATTGCGTTGACAACATTTCATCCTTCGGATTCTCGTGGTAGTCAATATGTTAATACTTTGACTATTGCAGGAATAACGCGGCTCAAGGCAGAGCAGACTATCTCCCTTAATATAACAGGAAGTCCCTCGTTGGAAGTACTTCCAAACAGCAGCTTTTCTGTTGTACTGACTTCCTTTTGGAAAAGTGATTATGCTGCAGGATTCGTGTCTCATACCACTTCTTACAGTTCAAACGGCCGCGTTTATTACTGGAGCACAACAGTTAGAAAACAAATTTTCAAAGAAAAGTACACACCAGTTGATATAACGGACAGCGGTTTGTATTTTTTGCAGAGCGTTGTAGCTGTGCAAGTCGATGAAAAATACACTGTTTTTAGCAATGTTCGAATTGATGGAAAACCTGTTTCGAGTGGTTTCACATCTTTGATGAGAGCCCCAGCGGTAGACATCCCTTTTTTCTTAGGTGCATTTGGGGTACTTTACCTAAGAAAAGGACAAAAGGTTGGTCTTTTTACTGACTATGTAGAACCTGGCAAGTCCTTTGTAAACGAGGCAGGTTCGGTGTTTTCGATGGCGAGGTTGCTAGCTCCAGCTCAACAGCCTGGTCTTTTTCAAACCCTAAAACATGTTCAAAAAAATCCTTTGTATCGTGGTGAACCAGGGATCAGCTATAGCTCAACTGCGGGGGATCAACTTGCATACGTACAAGGAAACGTTTTTAATCCAAATACAACTTTGCAAGGCTATGGGGACTTCACAACAACCTTGACGGGCACCTACCTTGTATCTTTAATATTTACAGTCAGTGGAAAAGTGCCTGAAAATTTTACTGCCTGCATTGGACCACGAAAATGTGCTGAATGTTATGTACAAGTTTCCGGTGCCCTCAGCCAATACCATAACACTTACGGATTGGTTGGGTTGGTAGGCATAACAGCGCATGAGCTAATTTCTGTTTGCTTTAAGTCCAACCATACTTCTTTCACTTTAATGAGCGCTAAACGTTCCGTCCATTATTTGAGTGGACTGAACGTAAATAAAACATTTGAACTCAAGCATCGATCGGTTGCTTTTCCTTCGAGTGGATGGAACGAGTTAACCGAGTGGAAAACAAAAAGTGGCCAGTTGCTGCAAAGAGTTCATGTGGTTGTTGGGGGACTATACGTCCTTTGTGCTAACTTGGGAATGAAAGCTGCTGTGCCAGGGCTTGTTGGAGTGAAGTTTGAAGCAATAGGGTTGTCAAATGTAGAGTTAATATCGACTTTAGCCAGCGTGCAGGCAGATTCCAAGGAATGGCTCAGTGTTTCTGTAGTTTCTCGCCTTAATGCGTCTGAAGTGATTGCCATTTCTCAGTTCACGAGTTCGAGTTTGTTAAACAACGGAGACAACGCTACATTCTTTGCTGCACTGTTAACAAACGAAAACGATAATGCTTGTTTATTGCTTCGGTCCCGTAAGAGCGTCTACGATGCTGGAAAATGGTGGCAAGGTATCGAGCAGTGGGAACCTCTTGATCAATTATGTCTGTCGTCAAACTCGGATGTGAGTAAAGGAAGATTTGTTGCTGATATAGCTGGTGTATATTTTGTTACTGCTGTTGTTTCAGTGAGGACCACAAGTAAAGTATACGAAAGCAGTTTGGTGGAACTCCTGCTATCAGTCAACGGAGATACGACCAATGGAAATGGTTTACGGGCCACAAAACAAGTTCCGAATGCTGGTTATTTTATTGTCCTTAGCCTCTCTGCTACCGTCCATCTGGAACCGTGGCAAACGTTATACCTAATGATCAGAGGCACGGGTGCTGGTTCATTTGAAGTTGTCAATGGAAGCACTTTTGGTGTTGCTTTGATAGAGGAAACAAAGTATTTCAAAAACGTGGCAACGAACATCGTTCAGTTTGACAAGGGTCCTCAGCTCATAAGTCACCCGCCACCGTCCATGAGTCTTGGAGATGATCTAGAATTAGGTGTTTCTTGGACTTGCGAAGCAGTTGCAAATGGCCCTGTGATGTATTCGTGGTTGAGAGAAAAAAAGACTGTAACAGCCTCTCGAGACCTGACTCTGGTAAATGTCCGTGAGGCCGACTCTGGTCGATATGTCTGCATGGCGGAATATGACACCATTAAAGTTTTCTCCCACTTCGCTGAACTTGATGTCTTCGAAACCAACCCACAATTTGAGAGCAAGGAAGTAACATCTCCAGAGAACAGCAATATTTCCCTTCAACTTGCCGTCCTTGCTTTGGACAAGCAGCGAGGCCCCGCCAACGTCTCCGTCTTGATAATCAAGGGAAACAAGAATGGCACTTTTGCACTTTCCCGGTCAATATCAAAAGGGAACATCTCTCTGAGAAATCAAATCCCATTGGATTACGAGGCCACCAGAGTGTACAGTTTAACACTCCTTGCTACTAACCTAGACACCAGCAAAACAAGCACTGCTAATGTCACGATTATTTTAACAGATGTCAATGATAACCCACCGATATTCACCAGCAGAAATGAAACATCTGTCAAGGAAAACGTGGTAAGTGGTACCACCATCTTTCAAGTAAAAACCGTTGATGCAGACTTTGGCAACAATTCCATAGTAACATATCATCTTCTGCCTGGTGAATATTCTGGAAAGTTTTCTATTGGTGTATCATCCGGGAATGTCACTCTGAATGGGGAGCTGGATTACGAAAACACGAGTGAAGTCATTCTTCGTATCCAAGCAACCGATGGAAAATTTCTTTCAAACACGACACTGGTTATAAATGTGGAAGACGTCAATGATAATTATCCATACTTCAGCGAGAGTTCATATTCAGCTGTTGTGCCTGAAAACATTTCCGTCGGCTACGTAGTAATCAGAGTAGCAGCAGAGGATAAAGACAGTGGATCAAATGGACAACTAACGTACTCATTGGGTGCAAACGATACTGATGCACTTCTGAAAGAAACGTTTTCGGTAAATTCAACAAACGGAGCTATCACCAGTTTGAAGAAAATTAAGTTAAATGCGTCTCAAGAAGAATTGATGTTTCAAGTAAATGTGTCTGATAATGGCATCCCCAAGAAGTCAGTTTCCGCGAACGTTACAATTACAGTGATGGATATCAACGATAACCCTCCAGTATTCATTTCAAGAAATAACACATCTGTTAGGGAAAATGTTGCAAATGGTACCATCATATTCCAGGTAAAAGCCGTTGATGCAGACTTTGGCAACAATTCCATAGTAACATATCATCTGTTGCCTGGTGAATATTCTAGAAAGTTTTCTATTGGTACATCATCCGGGAATATTACTCTCGCTGGAGAGCTGGACTACGAAAACACGACTGAAGTCATTCTTCGTATCCAGGCAACGGACGGAAAATTTGTTTCGAACACAACGCTGTTTGTAAATGTAGAAGATGTCAATGATAATTCTCCATATTTTAACGAGAGTTCCTATTCAGCTGTTGTACCTGAAAACATCCCCATCGGCTACGTGGTAATCAGAGTAGCAGCACAGGATAGAGACAGTGGATCAAATGGACAATTAACATACTCATTGCAGCCAGAGCCACACCATGCCGATGCAAAATTTTCTATCAACGCTACAACTGGAGCCATCACAACGCGGGAAGTATTAAAAGTACACAATGTGCAAGAAACCTATAACTTCGTTGTTCAGGTCATTGATCATGGCAACCCGAGTTTAAAATCCAACACAAACCTCTCTATCATTGTTGAGGACATAAACGACTCACCTCCAGAATTCAAAGAATGCAAAAATTTTACTTCGCGAGAACCAGTTGGGGCAAGAACAACTATATCACGTGTTTCCGCTACTGATGCAGACTACGGATCAAATGCCAACATTACTTATTCTCTCGATGTTTTAAACCTGGAAGTTTGCACAAATGAGTTTGAAATAGTTAATGATAGCCAGATACAAAACCTGGGAATGCTGGACTGGGGTTCGAATTGTACCATCAAAATCACTGCCAGCGATGGAGAAAACATAGTTTTTTGTGTTCTTGCTCTTCTTGTTGCTAAGAAGCCTGAGGAAACTGTAAACCTAGCTCAAACAGATGAGTTGCCAGGAGGTGCAATTGCCTTGATTGTTATCGGCATTTTTCTCTTTATTATTATACTCGTATCTCTGTTGATTTGGTACTTCAGAATGCACAGAAGACCACGCAGGTATATCCTCCATCATCCACAGGCACAGGAAATGTATAAAGAAGAAAGCAAGGGACCAGAATCAAAAGGAAACAAAACCACCAACCTATGA

Transcript

Protein

XP_074616068.1

MLRQVAYQQFYLFCVLFGFCKAYEEAGVSSYLKENVDHMSDTGMTLVNVWSVSSSRQGVFLSAGAGVNAFHDTFKIPKPGIYFVSLNLMMTNASDGFLIASLIINNDFEATSGIDGIFGNTGLNGSLSLSGFLRLYQNDFLSLYLRGSGGTLLRDSTFSVLYMSNIGSVPGFHTLLSRDQIIQNQAKSRIENWRASGSKGLFVMRSGTSPSVGMFCAIIEGIHKFTSNINIQSNGNPTHYALSFALNSNVTLLRQFSSRRWKYSTGVSGVFYLYRGDCVELQIELISGGDLILKSGSSFSGLFLGIKSAVDTHFSVTLRRGNIPAGWNRMENSTMISSIRNFKSENAYSTLNNGVFTCDSEGLFIVTAVVNVNSTFSLPENYFGLLVSVGGSVHDSNSRQFIAWTKSSGADSLIVSGVVELGKGVTVSVYIYCGDGDGAIIDGLFSVVMIPPDWPGVSASLKDTVNLKLSGWTKLTRWKTSAVPGSFSFDNAFSPSDGVYRTRADGTYFLSCNAIFNGQGKGNLSLIIAIDDNLDEGNGLFSLNESPNGDVTLNVAGSIKLRKNQSVSVFVASTEPKAWNISSDTGFSVALVGSECLYVPGLFAVKSDEGLSASSSYGEIGGWKTIHIFDSQLDGNGTQWNPTSGRFKADEDGLYLVTANLLVRHSGSSKVIMNVLLDDGQKQKIALTTFHPSDSRGSQYVNTLTIAGITRLKAEQTISLNITGSPSLEVLPNSSFSVVLTSFWKSDYAAGFVSHTTSYSSNGRVYYWSTTVRKQIFKEKYTPVDITDSGLYFLQSVVAVQVDEKYTVFSNVRIDGKPVSSGFTSLMRAPAVDIPFFLGAFGVLYLRKGQKVGLFTDYVEPGKSFVNEAGSVFSMARLLAPAQQPGLFQTLKHVQKNPLYRGEPGISYSSTAGDQLAYVQGNVFNPNTTLQGYGDFTTTLTGTYLVSLIFTVSGKVPENFTACIGPRKCAECYVQVSGALSQYHNTYGLVGLVGITAHELISVCFKSNHTSFTLMSAKRSVHYLSGLNVNKTFELKHRSVAFPSSGWNELTEWKTKSGQLLQRVHVVVGGLYVLCANLGMKAAVPGLVGVKFEAIGLSNVELISTLASVQADSKEWLSVSVVSRLNASEVIAISQFTSSSLLNNGDNATFFAALLTNENDNACLLLRSRKSVYDAGKWWQGIEQWEPLDQLCLSSNSDVSKGRFVADIAGVYFVTAVVSVRTTSKVYESSLVELLLSVNGDTTNGNGLRATKQVPNAGYFIVLSLSATVHLEPWQTLYLMIRGTGAGSFEVVNGSTFGVALIEETKYFKNVATNIVQFDKGPQLISHPPPSMSLGDDLELGVSWTCEAVANGPVMYSWLREKKTVTASRDLTLVNVREADSGRYVCMAEYDTIKVFSHFAELDVFETNPQFESKEVTSPENSNISLQLAVLALDKQRGPANVSVLIIKGNKNGTFALSRSISKGNISLRNQIPLDYEATRVYSLTLLATNLDTSKTSTANVTIILTDVNDNPPIFTSRNETSVKENVVSGTTIFQVKTVDADFGNNSIVTYHLLPGEYSGKFSIGVSSGNVTLNGELDYENTSEVILRIQATDGKFLSNTTLVINVEDVNDNYPYFSESSYSAVVPENISVGYVVIRVAAEDKDSGSNGQLTYSLGANDTDALLKETFSVNSTNGAITSLKKIKLNASQEELMFQVNVSDNGIPKKSVSANVTITVMDINDNPPVFISRNNTSVRENVANGTIIFQVKAVDADFGNNSIVTYHLLPGEYSRKFSIGTSSGNITLAGELDYENTTEVILRIQATDGKFVSNTTLFVNVEDVNDNSPYFNESSYSAVVPENIPIGYVVIRVAAQDRDSGSNGQLTYSLQPEPHHADAKFSINATTGAITTREVLKVHNVQETYNFVVQVIDHGNPSLKSNTNLSIIVEDINDSPPEFKECKNFTSREPVGARTTISRVSATDADYGSNANITYSLDVLNLEVCTNEFEIVNDSQIQNLGMLDWGSNCTIKITASDGENIVFCVLALLVAKKPEETVNLAQTDELPGGAIALIVIGIFLFIIILVSLLIWYFRMHRRPRRYILHHPQAQEMYKEESKGPESKGNKTTNL

Uniprot

Uniprot term	Description
Q2PZL6	Protocadherin Fat 4 OS=Mus musculus OX=10090 GN=Fat4 PE=1 SV=2
Q9V5N8	Protocadherin-like wing polarity protein stan OS=Drosophila melanogaster OX=7227 GN=stan PE=1 SV=4
Q24292	Protein dachsous OS=Drosophila melanogaster OX=7227 GN=ds PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028	Cadherin	Cadherin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002126	Domain	Cadherin-like	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR020894	Conserved_site	Cadherin conserved site	Interproscan
IPR008983	Homologous_superfamily	Tumour necrosis factor-like domain superfamily	Interproscan
IPR039808	Family	Cadherin	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24027	CADHERIN-23	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007155	Biological Process	cell adhesion	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000902	Biological Process	cell morphogenesis	Interproscan
GO:0005912	Cellular Component	adherens junction	Interproscan
GO:0007043	Biological Process	cell-cell junction assembly	Interproscan
GO:0007275	Biological Process	multicellular organism development	Interproscan
GO:0016339	Biological Process	calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0016342	Cellular Component	catenin complex	Interproscan
GO:0034332	Biological Process	adherens junction organization	Interproscan
GO:0044331	Biological Process	cell-cell adhesion mediated by cadherin	Interproscan
GO:0045296	Molecular Function	cadherin binding	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan
GO:0098742	Biological Process	cell-cell adhesion via plasma-membrane adhesion molecules	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06476	ITGA2B, CD41; integrin alpha 2B	-	CD molecules	ko04090	deepkoala