Gene detail

Detailed information of XP_074616136.1 in Acropora palmata

Genomic Location: NC_133884.1:20779148...20797743
NR annotation: XP_015766610.1, PREDICTED: protein BZZ1-like [Acropora digitifera]
Species abbreviation APALM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074616136.1

ATGTCCACAACAAGGGAAGGATACTTAAGGGACTTGCCTCATCCAAGTATCAATGAGTCTCTTAAATCTAATACGCATAGTACTATCAAACTTCTTAAAACAGTGGGTGACTTTGTCTCTAAAGTTGCATCAGCAAAAGAACAATTGGGAAACCAGCTCTTGTCCATTGTGGAGTCATTTAGGAAGAAAAATGCTGACATGAAAAGAGATCGGAATGCCTTAAGCAGTGCTGTGAGTTGCTGGGAAACACTTCTTGGTGAATATGAAAAACAAGCTCAGGATATGCTCAAGATATCTTCCAGTCTTCAAAAGAAAGTCAACAGTGTTGTTTTTGAAGAAGCTGTTAGGAAAAAGGCGATCATAAAAAAGATGTTTTTATTTCGAGAGAACAGTGAAAACCAGATTGAAAAAACAGATGATTTGTTACAAAAGTGCCATAAGGAATATTCAGATGCCTGTAGCAAATTGGCAAAACTACAAAGCATAGGAGCTGAAGCTGGGAAACAAGAGCACGTCCAAACGCTGTGCCTTAACACTCACAATGCCTACGTACTGCAGCTGAGTACTGTGAATAATATGAACAGAGCCTTTTACAGCACAACTCTGCCAGAAATGTTGGATGACCTTCAGCTTGTTCAAGAGGATATATCTGAATCACTAAGAGTTGCATTCAGCAAGTGCTCCAAAATTGAAAAAGATAATATAACTGACAGTGTGCAGAGGTTAGACAATGTAGGACGCATGTTTCAGCTGATGAATGGCAGGGCTGATATCTCCACATTTGTCCAGGCAAACAATCCGGGGGCCTTCTCACCACCTCGTAAAAGTTTTAGCAAACCAGAGGACAGCCAGTCACTGAATGTCGTTGATAACAAACTATATTTAGGTGATGTAACGGAACCGGTTTTGAAGAGGAAGTACATTGCACTGCATATTAAGCTTCGGAACTATGACACATCTATCAAAAAGGATCAAGAAGCAGTGAAATCTCTAAAACAGCTTCAGGAAAGCTATTCAGATAATCCAGCTTACGGGAATGCTGTTGAAGTTGAAGATGACTTGTTAAAGCAAAAGAATGAACTAAGAGTCAAGGAGTGGTATCGTTGTGTTTCGAAAGAACAGACAAGACTTTTCACCGCTGATGTTCTCAACAGAATTCAAGTTACAGAGGACGATCTGCAAGATGAGGAGATCAGTGACGATGAAAGCGTGGCGGGCCCAGTGGACAAACGACAGAGCGTACATAGCGTAAAAGGAAAGAAAATACGAAAAGCTGGCCAACATCAGTTTGAAGATCACACTTTCAGAAAACCGAAATTTTGTTATTATTGCAAAAGTCTCATAAAAGGGTTAATTCGACAAGGTGCCCGCTGCAAAGTTTGTAAAATGAGTGTTCACCACAAATGTAGGGACAATGTCCCGTACTGTCCAGGAGAAAGGAATTCAAAAGTACAATCGCTTCACATTCGAAATCAAGACGAAGATTCTGATGGGCCAGTGTACAGTGATGTGGACGACGCTCCTACCCCACCCCAGCACAGGAAGCCTTTGGGTCCCACATCATCGTTACCTGTCTTCAGAAGAAATGACGATCTTTACGATACTGCAGAGGAAATGATCTCAACGGGGACGAGCTACTGTGTTGCACTTTACGACTTCGACGGAGAGAATGATGGGGACTTGAGATTATGTGCTGGTGACAAAATAAGTGTTCTGAACAGCGCAGATAAAAACTGGTGGGAAGGTTCAAGTAAGGGCTACAAGGGCTTCTTTCCCGCGTCGTACGTTCAGGTCATTTCGTCAGATGACGTCATTCTCCGCTGTTTGTTTGATTTCATCGGTCAGGAAGGAGATGAGTTGACAATTCAAGCAAACCAGATTGTCGTGCAAATCAGAAATGAAGGCAATGGTTGGATCGTCGGCAAAACAGGGTCAGTAGAAGGAGCTTTCCCTGCGTCATATGTTGAAGAACTCAACAACAATGGTCCCGATTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q68F99	SH3 and cysteine-rich domain-containing protein 3 OS=Xenopus tropicalis OX=8364 GN=stac3 PE=2 SV=1
Q8BZ71	SH3 and cysteine-rich domain-containing protein 3 OS=Mus musculus OX=10090 GN=Stac3 PE=1 SV=1
Q96MF2	SH3 and cysteine-rich domain-containing protein 3 OS=Homo sapiens OX=9606 GN=STAC3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003971 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00130 all species →	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan
PF00611 all species →	FCH	Fes/CIP4, and EFC/F-BAR homology domain	Family	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR001060 all species →	Domain	FCH domain	Interproscan
IPR039688 all species →	Family	STAC1/2/3	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15135 all species →	STAC	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003009 all species →	Biological Process	skeletal muscle contraction	Interproscan
GO:0031234 all species →	Cellular Component	extrinsic component of cytoplasmic side of plasma membrane	Interproscan
GO:1901387 all species →	Biological Process	positive regulation of voltage-gated calcium channel activity	Interproscan
GO:1903078 all species →	Biological Process	positive regulation of protein localization to plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23712	STAC2; SH3 and cysteine-rich domain-containing protein 2	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.